David Samuels’ peer-reviewed publications on HIV/AIDS

Links to full text are on the journal names.

 

Genetic Variation in iron metabolism is associated with neuropathic pain and pain severity in HIV-infected patients on antiretroviral therapy

Asha R. Kallianpur, Peilin Jia, Ronald J. Ellis, Zhongming Zhao, Cinnamon Bloss, Wanqing Wen, Christina M. Marra, Todd Hulgan, David M. Simpson, Susan Morgollo, Justin C. McArthur, David B. Clifford, Ann C. Collier, Benjamin B. Gelman, J. Allen, McCutchan, Donald Franklin, David C. Samuels, Debralee Rosario, Emily Holzinger, Deborah G. Murdock, Scott Letendre, Igor Grant for the CHARTER Study Group, (2014) PLoS One, 9(8) e103123

 

Epidermal nerve fiber density, oxidative stress and mitochondrial haplogroups in HIV-infected Thais initiating therapy

T. Hulgan, R.T. Levinson, M. Gerschenson, N. Phanuphak, J. Ananworanich, N. Teeratakulpisarm, T. Jadwattanakul, D.E. LiButti, H. Fink, J.C. McArthur, G.J. Ebenezer, P.Hauer, D. Murdock, C.M. Shikuma, D.C. Samuels,. AIDS 28(11) 1625-1633.

 

The Other Genome: A Systematic Review of Studies of Mitochondrial DNA Haplogroups and Outcomes of HIV Infection and Antiretroviral Therapy.

Hart AB, Samuels DC, Hulgan T (2013) AIDS Rev. 2013 Oct-Dec;15(4):213-20 PMID: 24322381

 

Mitochondrial genomics and antiretroviral therapy-associated metabolic complications in HIV-infected black South Africans: a pilot study

Phumla Z. Sinxadi, Joel A. Dave, David C. Samuels, Jeannine M. Heckmann, Gary Maartens, Naoimi S. Levitt, C. William Wester, David W. Haas, Todd Hulgan (2013) AIDS research and Human Retroviruses. 29 (7) 1031-1039 PMID 23428049

 

Mitochondrial DNA variation and HIV-associated sensory neuropathy in CHARTER

Emily R. Holzinger, Todd Hulgan, Ronald J. Ellis, David C. Samuels, Marylyn D. Ritchie, David W. Haas, Asha R. Kallianpur, Cinnamon S. Bloss, David B. Clifford, Ann C. Collier, Benjamin B. Gelman, Christina M. Marra, Justin C. McArthur, J. Allen McCutchan, Susan Morgello, David M. Simpson, Donald R. Franklin, Debralee Rosario, Doug Selph, Scott Letendre, and Igor Grant for the CHARTER Group (2012) Journal of NeuroVirology (18) 511-520 PMC3587171

 

T cell Activation Markers and African Mitochondrial DNA Haplogroups among Non-Hispanic Black Participants in AIDS Clinical Trials Group Study 384

Todd Hulgan, Gregory K. Robbins, Spyros A. Kalams, David C. Samuels, Benjamin Grady, Robert Shafer, Deborah G. Murdock, Doug Selph, David W. Haas, and Richard B. Pollard for the AIDS Clinical Trials Group. (2012) PLoS One 7(8) article e43803. PMC3433792

 

Risk Factors for Symptomatic Hyperlactatemia and Lactic Acidosis Among Combination Antiretroviral Therapy-Treated Adults in Botswana: Results From a Clinical Trial

C.W. Wester, S.K. Eden, B.E. Shepherd, H. Bussman, V. Novitsky, D.C. Samuels, S.L. Hendrickson, C.A. Winkler, S.J. O’Brien, M. Essex, R.T. D’Aquila, V. deGruttola, R. G. Marlink (2012) AIDS Research and Human Retroviruses 28, 759-765.

 

Mitochondrial Genomics and CD4 T-cell count recovery after antiretroviral therapy initiation in AIDS clinical trials group study 384

B.J. Grady, D.C. Samuels, G.K. Robbins, D. Selph, J.A. Canter, R.B. Pollard, D.W. Haas, R. Shafer, S.A. Kalams, D.G. Murdock, M.D. Ritchie, T.  Hulgan (2011), Journal of AIDS 58(4), 363-370. PMC3204178

 

Mitochondrial aging is accelerated by anti-retroviral therapy through clonal expansion of mtDNA mutations

B.A.I. Payne, I.J. Wilson. C.A. Hateley, R. Horvath, M. Santibanez-Koref, D.C. Samuels, D.A. Price, P.F. Chinnery (2011), Nature Genetics 43 (8), 806-810. PMC3223397

 

An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcriptase Inhibitors

K.V. Wendelsdorf, Z. Song, Y. Cao, D.C. Samuels (2009), PLOS Computational Biology 5(1) e1000261. PMC2603287.

 

Computational models of antiviral toxicity

D.C. Samuels (2007), Current Opinion in Drug Discovery & Development 10 (1): 43-48. PMID:17265740.

 

Mitochondrial AZT metabolism

D.C. Samuels (2006), IUBMB Life 58 (7): 403-408. PMID:16801215.

 

A computational model of mitochondrial AZT metabolism

P.C. Bradshaw, J.X. Li, D.C. Samuels (2005) Biochemical Journal 392: 363-373. PMC1316272.