{"id":20,"date":"2014-12-31T15:15:55","date_gmt":"2014-12-31T20:15:55","guid":{"rendered":"https:\/\/my.vanderbilt.edu\/davidsamuels\/?page_id=20"},"modified":"2019-08-14T11:31:33","modified_gmt":"2019-08-14T16:31:33","slug":"20-2","status":"publish","type":"page","link":"https:\/\/my.vanderbilt.edu\/davidsamuels\/publications\/20-2\/","title":{"rendered":"Publications in chronological order"},"content":{"rendered":"

David Samuels’ peer-reviewed publications in chronological order<\/strong><\/h3>\n

Links to full text are in the paper names
\n<\/strong><\/p>\n

2019<\/strong><\/p>\n

Mitochondrial DNA Haplogroups and Delirium During Sepsis<\/strong><\/a><\/p>\n

Samuels, David C.; Hulgan, Todd <\/b>; Fessel, Joshua P. <\/b>; Billings, Frederic T. <\/b>; Thompson, Jennifer L. <\/b>; Chandrasekhar, Rameela <\/b>; Girard, Timothy D. Critical Care Medicine<\/strong><\/em>, 47 (8) 1065-1071. <\/b><\/p>\n

 <\/p>\n

Genomic and transcriptomic characterization of the mitochondrial-rich oncocytic phenotype on a thyroid carcinoma background<\/strong><\/a><\/p>\n

Cavadas, Bruno; Pereira, Joana B. <\/b>; Correia, Marcelo <\/b>; Fernandes, Veronica <\/b>; Eloy, Catarina <\/b>; Sobrinho-Simoes, Manuel <\/b>; Soares, Paula <\/b>; Samuels, David C. <\/b>; Maximo, Valdemar; Pereira, Luisa, Mitochondrion<\/strong><\/em>, 46 pg 123-133. <\/b><\/p>\n

\n

Nuclear-Mitochondrial interactions influence susceptibility to HIV-associated for neurocognitive impairment<\/strong><\/a><\/p>\n

Smieszek, S.; Jia, P. <\/b>; Samuels, D. C. <\/b>; Zhao, Z.; Barnholtz-Sloan, J. <\/b>; Kaur, H. <\/b>; Letendre, S.; Ellis, R.; Franklin, D. R. <\/b>; Hulgan, T.; Kallianpur, A. <\/b>; Bush, W. S., Mitochondrion<\/strong><\/em>, 46 pg 247-255.
\n<\/b><\/sup><\/span><\/p>\n

\n

Cerebrospinal Fluid Ceruloplasmin, Haptoglobin, and Vascular Endothelial Growth Factor Are Associated with Neurocognitive Impairment in Adults with HIV Infection<\/strong><\/a><\/p>\n

Kallianpur, A. R. <\/b>; Gittleman, H.; Letendre, S. <\/b>; Ellis, R.; Barnholtz-Sloan, J. S. <\/b>; Bush, W. S.; Heaton, R. <\/b>; Samuels, D. C. <\/b>; Franklin, D. R., Jr. <\/b>; Rosario-Cookson, D.; Clifford, D. B. <\/b>; Collier, A. C. <\/b>; Gelman, B.; Marra, C. M. <\/b>; McArthur, J. C.; McCutchan, J. A. <\/b>; Morgello, S. <\/b>; Grant, I. <\/b>; Simpson, D.; Connor, J. R. <\/b>; Hulgan, T. <\/b>; McArthur, Justin <\/b>; Morgello, Susan <\/b>; Simpson, David <\/b>; McCutchan, J. Allen <\/b>; Collier, Ann <\/b>; Marra, Christina; Clifford, David <\/b>; Gelman, Benjamin, Molecular Neurobiology<\/strong><\/em>, 56(5) 3808-3818.<\/span><\/span><\/p>\n

\n

Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan<\/strong><\/a><\/p>\n

Chen, Dan-Qian <\/b>; Cao, Gang; Chen, Hua <\/b>; Argyopoulos, Christos P. <\/b>; Yu, Hui <\/b>; Su, Wei <\/b>; Chen, Lin <\/b>; Samuels, David C. <\/b>; Zhuang, Shougang; Bayliss, George P. <\/b>; Zhao, Shilin <\/b>; Yu, Xiao-Yong; Vaziri, Nosratola D. <\/b>; Wang, Ming <\/b>; Liu, Dan; Mao, Jia-Rong <\/b>; Ma, Shi-Xing; Zhao, Jin <\/b>; Zhang, Yuan <\/b>; Shan, You-Quan <\/b>; Kang, Huining); Ye, Fei; Cheng, Xiao-Hong <\/b>; Li, Xiang-Ri; Zhang, Li <\/b>; Meng, Mei-Xia <\/b>; Guo, Yan <\/b>; Zhao, Ying-Yong, Nature Communications<\/strong><\/em>, 10 art 1476.<\/span><\/span><\/p>\n

\n

Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples<\/strong><\/a><\/p>\n

Chigaev, Michael <\/b>; Yu, Hui <\/b>; Samuels, David C. <\/b>; Sheng, Quanhu; Oyebamiji, Olufunmilola <\/b>; Ness, Scott; Yue, Wei; Zhao, Ying-Yong <\/b>; Guo, Yan, Frontiers in Genetics<\/strong><\/em>, 10 art 211. <\/b><\/p>\n

\n

Architectures and accuracy of artificial neural network for disease classification from omics data<\/strong><\/a><\/p>\n

Yu, Hui <\/b>; Samuels, David C. <\/b>; Zhao, Ying-yong; Guo, Yan, BMC Genomics<\/strong><\/em>, 20 art 167. <\/b><\/p>\n

\n

Single-nucleotide variants in human RNA: RNA editing and beyond<\/strong><\/a><\/p>\n

Guo, Yan; Yu, Hui; Samuels, David C.; Yue, Wei <\/b>; Ness, Scott; Zhao, Ying-yong, Briefings in Functional Genomics<\/strong><\/em>, 18(1) 30-39 <\/b><\/p>\n

 <\/p>\n

 <\/p>\n

2018<\/strong><\/p>\n

Quality and concordance of genotyping array data of 12,064 samples from 5840 cancer patients<\/strong><\/a><\/p>\n

Mingsheng Guo, Wei Yue, David C. Samuels<\/u>, Hui Yu, Jing He, Ying-Yong Zhao, Yan Guo, Genomics<\/em><\/strong>. 111(4) 950-957<\/p>\n

 <\/p>\n

Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome<\/a><\/strong><\/p>\n

Shilin Zhao, David C. Samuels<\/u>, Ying-Yong Zhao, Yan Gou,Genomics<\/em><\/strong>, 110(4) 211-220<\/p>\n

 <\/p>\n

Mutation-specific effects in germline transmission of pathogenic mtDNA variants<\/strong><\/a><\/p>\n

Auke B.C. Otten, Suzanne C.E.H. Sallevelt, Phillippa J. Carling, Joseph C.F.M. Dreesen, Marion Drusedau, Sabine Spierts, Aimee D.C. Paulussen, Christine E.M. de Die-Smulders, Mary Herbert, Patrick F. Chinnery, David C. Samuels<\/u>, Patrick Lindsey, Hubert J.M. Smeets,\u00a0 Human Reproduction<\/em><\/strong> 33(7) 1331-1341<\/p>\n

 <\/p>\n

Relation of body mass index to symptom burden in patients with atrial fibrillation<\/strong><\/a><\/p>\n

Brandon Chalazan, Deanna Disckerman, Arvind Sridhar, Maureen Farrell, Katherine Gayle, David C. Samuels<\/u>, Benjamin Shoemaker, Dawood Darbar, American Journal of Cardiology<\/em><\/strong> 122(2) 235-241<\/p>\n

 <\/p>\n

Hemochromatosis (HFE) gene variants are associated with increased mitochondrial DNA levels during HIV-1 infection and antiretroviral therapy<\/strong><\/a><\/p>\n

Asha R. Kallianpur, Mariana Gerschenson, Todd Hulgan, Harpreet Kaur, David B. Clifford, David W. Haas, Deborah G. Murdock, Justin C. McArthur, David C. Samuels<\/u>, David M. Simpson, AIDS Research and Human Retroviruses, 34(11) 942-949
\n<\/em><\/strong><\/p>\n

 <\/p>\n

The role of mitochondrial DNA variation in age-related decline in gait speed among older men living with human immunodeficiency virus<\/strong><\/a><\/p>\n

Jing Sun, Todd T. Brown, David C. Samuels<\/u>, Todd Hulgan, Gypsyamber D\u2019Souza, Beth D. Jamieson, Kristine M. Erlandson, Jeremy Martinson, Frank J. Palella, Joseph B. Margolick, Gregory D. Kirk, Jennifer Schrack, Clinical Infectious Diseases<\/em><\/strong> 67(5) 778-784<\/p>\n

 <\/p>\n

Cereberospinal fluid Ceruloplasmin, Haptoglobin and vascular endothelial growth factor are associated with neurocognitive impairment in adults with HIV infection<\/strong><\/a><\/p>\n

Asha R. Kallianpur, Hayley Gittleman, Scott Letendre, Ronald Ellis, Jill S. Barnholtz-Sloan, William S. Bush, Ronald Heaton, David C. Samuels<\/u>, Donald R. Franklin, Debralee Rosario-Cookson, David B. Clifford, Benjamin B. Gelman, Christina M. Marra, Justin C. McArthur, J. Allen McCutchan, Susan Morgello, Igor Grant, David M. Simpson, James R. Connor, Todd Hulgan, Molecular Neurobiology <\/em><\/strong>56(5) 3808-3818<\/p>\n

 <\/p>\n

Strategies for processing and quality control of Illumina genotyping arrays<\/strong><\/a><\/p>\n

Shilin Zhao, Wang Jing, David C. Samuels<\/u>, Quanghu Sheng, Yu Shyr, Yan Guo,\u00a0 Briefings in Bioinformatics<\/em><\/strong> 19(5) 765-775<\/p>\n

 <\/p>\n

Single-nucleotide variants in human RNA: RNA editing and beyond<\/strong><\/a><\/p>\n

Yan Guo, Hui Yu, David C. Samuels<\/u>, Wei Yue, Scott Ness, Ying-Yong Zhao, Briefings in Functional Genomics <\/em><\/strong>18(1) 30-39<\/p>\n

 <\/p>\n

Peripheral blood mitochondrial DNA copy number obtained from genome-wide genotype data is associated with neurocognitive impairment in persons with chronic HIV infection<\/strong><\/a><\/p>\n

Todd Hulgan, Asha Kallianpur, Yan Guo, Jill Barnholtz-Sloan, Haley Gittleman, Todd Brown, Ronald Ellis, Scott Letendre, Robert Heaton, David C. Samuels<\/u> (2018), JAIDS<\/em><\/strong>.80(4) 95-102<\/p>\n

 <\/p>\n

Bi-stream CNN Down Syndrome screening model based on genotyping array<\/strong><\/a><\/p>\n

Bing Feng, William Hoskins, Yan Zhang, Zibo Meng, David C. Samuels<\/u>, Yan Guo, Jijun Tang, BMC Medical Genomics 11(5) art 105<\/em><\/strong><\/p>\n

 <\/p>\n

Power and sample size calculations for high-throughput sequencing-based experiments<\/strong><\/a><\/p>\n

Chung-I Li, David C. Samuels<\/u>, Ying-Yong Zhao, Yu Shyr, Yan Guo, Briefings in Bioinformatics<\/em><\/strong> 19(6) 1247-1255<\/p>\n

 <\/p>\n

2017<\/strong><\/p>\n

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data<\/strong><\/a><\/p>\n

Yan Guo, Shilin Zhao, Quanhu Sheng, David C. Samuels<\/u>, Yu Shy,\u00a0 BMC Genomics,<\/em><\/strong> 18(6) article 690<\/p>\n

 <\/p>\n

StrandScript: evaluation of Illumina genotyping array design and strand correction<\/strong><\/a><\/p>\n

Jing Wang, David C. Samuels<\/u>, Yu Shyr, Yan Guo,\u00a0 Bioinformatics<\/em><\/strong>, 33(15) 2399-2401<\/p>\n

 <\/p>\n

Multi-perspective quality control of Illumina sequencing data analysis<\/strong><\/a><\/p>\n

Quanhu Sheng, Kasey Vickers, Shilin Zhao, Jing Wang, David C. Samuels<\/u>, Olivia Koues, Yu Shyr, Yan Gu,\u00a0 Briefings in Functional Genomics<\/em><\/strong>, 16 (4) 194-204<\/p>\n

 <\/p>\n

Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study<\/strong><\/a><\/p>\n

Peilin Jia, Zhongming Zhao, Todd Hulgan, William S. Bush, David C. Samuels<\/u>, Cinnamon S. Bloss, Robert K. Heaton, Ronald J. Ellis, Nicholas Schork, Christina M. Marra, Ann C. Collier, David B. Clifford, Benjamin B. Gelman, Ned Sacktor, Susan Margello, David M. Simpson, J. Allen McCutchan, Jill S. Barnholtz-Sloan, Donald R. Franklin, Debralee Rosario, Scott L. Letendre, Igor Grant, Asha R. Kallianpur, American Journal of Medical Genetics part B \u2013 Neuropsychiatric Genetics<\/em><\/strong>, 174(4) 413-426<\/p>\n

 <\/p>\n

Cerebrospinal fluid (CSF) biomarkers of iron status are associated with CSF viral load, antiretroviral therapy, and demographic factors in HIV-infected adults<\/strong><\/a><\/p>\n

Stephanie M. Patton, Quan Wang, Todd Hulgan, James R. Connor, Peilin Jia, Zhongming Zhao, Scott L. Letendre, Ronald J. Ellis, William S. Bush, David C. Samuels<\/u>, Donald R. Franklin, Harpreet Kaur, Jennifer Iudicello, Igor Grant, Asha R. Kallianpur,\u00a0 Fluids and Barriers of the CNS<\/em><\/strong>, 14 article 11<\/p>\n

 <\/p>\n

Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis<\/strong><\/a><\/p>\n

Yan Guo, Yulin Dai, Huo Yu, Shilin Zhao, David C. Samuels<\/u>, Yu Shyr,\u00a0 Genomics<\/em><\/strong>, 109(2) 83-90<\/p>\n

 <\/p>\n

OSBPL10m RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans<\/strong><\/a><\/p>\n

Beatriz Sierra, Petr Triska, Pedro Soares, Gissel Garcia, Ana B. Perez, Eglys Aguirre, Marisa Oliveira, Bruno Cavadas, Be A. Atrice Regnault, Mayling Alverez, Didye Ruiz, David C. Samuels<\/u>, Anavaj Sakuntabhai, Luisa Pereira, Maria G. Guzman, PLoS Pathagens<\/em><\/strong>, 13(2) article e1006220<\/p>\n

 <\/p>\n

Mitochondrial haplogroups affect severity but not prevalence of diabetic retinopathy<\/strong><\/a><\/p>\n

Jana A. Bregman, David J. Herren, Christopher B. Estopinal, Isaac M. Chocron, Paula A. Harlow, Cassandra Warden, Milam A. Brantley Jr.,\u00a0 David C. Samuels<\/u> (2017), Investigative Ophthalmology & Visual Science,<\/em><\/strong> 58(2) 1346 \u2013 1351<\/p>\n

 <\/p>\n

Estimating relative mitochondrial DNA copy number using high throughput sequencing data<\/strong><\/a><\/p>\n

Pan Zhang, Brian D. Lehmann, David C. Samuels<\/u>, Shilin Zhao, Ying-Yong Zhao, Yu Shyr, Yan Guo, Genomics<\/em><\/strong> 109(5-6) 457-462<\/p>\n

 <\/p>\n

Current research on non-coding ribonucleic acid (RNA)<\/strong><\/a><\/p>\n

Jing Wang, David C. Samuels<\/u>, Shilin Zhao, Yu Xiang, Yan Guo, Genes<\/strong><\/em>, 8(12) Article 366 (20 pages)<\/p>\n

 <\/p>\n

Mitochondrial haplogroups modify the effect of diabetes duration and HbA1c on proliferative diabetic retinopathy risk in patients with type 2 diabetes<\/strong><\/a><\/p>\n

Sabrina L. Mitchell, Abigail C. Neininger, Carleigh N. Bruce, Isaac M. Chocron, Jana Bregman, Christopher B. Estopinal, Ayesha Muhammad, Allison C. Umfress, Kelli L. Jarell, Cassandra Warden, Paula Harlow, Melissa Wellons, David C Samuels<\/u>, Milam A, Brantley, Investigative Ophthalmology & Visual Science <\/em><\/strong>58(14) 6481-6488<\/p>\n

 <\/p>\n

Strategies for equitable pharmacogenomics-guided Warfarin dosing among European and African American individuals in a clinical population<\/strong><\/a><\/p>\n

Laura K. Wiley, Jacob P. VanHouten, David C. Samuels<\/u>, Melinda C. Aldrich, Dan M. Roden, Josh F. Peterson, Joshua C. Denny,\u00a0 Pacific Symposium on Biocomputing Proceedings <\/em><\/strong>22, pages 545-556<\/p>\n

 <\/p>\n

2016<\/strong><\/p>\n

Mitochondrial DNA sequence characteristics modulate the size of the genetic bottleneck<\/strong><\/a><\/p>\n

Ian J Wilson, Phillipa J. Carling, Charlotte L. Alston, Vasileios I. Floros, Angela Pyle, Gavin Hudson, Suzanne C.E.H. Sallevelt, Costana Lamperti, Valeria Carelli, Laurence A. Bindoff, David C. Samuels<\/u>, Passorn Wonnapinij, Massimo Zeviani, Robert W. Taylor, Hubert J.M. Smeets, Rita Horvath, Patrick F. Chinnery, Human Molecular Genetics<\/em><\/strong> 25(5) 1031-1041<\/p>\n

 <\/p>\n

Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequence data<\/strong><\/a><\/p>\n

Pan Zhang, David C. Samuels<\/u>, Brian Lehmann, Thomas Stricker, Jennifer Pientenpol, Yu Shyr, Yan Guo,\u00a0 Briefings in Bioinformatics<\/em><\/strong> 17(2), 224-232<\/p>\n

 <\/p>\n

Mitochondria single nucleotide variation across six blood cell types<\/strong><\/a><\/p>\n

Pan Zhang, David C. Samuels<\/u>, Jing Wang, Shilin Zhao, Yu Shyr, Yan Guo, Mitochondrion<\/em><\/strong> 28, 16-22<\/p>\n

 <\/p>\n

European mitochondrial DNA haplogroups are associated with cerebrospinal fluid biomarkers of inflammation in HIV infection<\/strong><\/a><\/p>\n

David C. Samuels<\/u>, Asha R. Kallianpur, Ronald J. Ellis, William S. Bush, Scott Letendre, Donald Franklin, Igor Grant, Todd Hulgan, Pathogens & Immunity<\/em><\/strong> 1(2) 330-351<\/p>\n

 <\/p>\n

Homeostatic responses regulate selfish mitochondrial genome dynamics in C. elegans<\/strong><\/a><\/p>\n

Bryan L. Gitschlag, Cait S. Kirby, David C. Samuels<\/u>, Rama D. Gangula, Simon A. Mallal, Maulik R. Patel,\u00a0 Cell Metabolism<\/em><\/strong> 24(1), 91-103<\/p>\n

 <\/p>\n

Mitochondrial haplogroups as a risk factor for herpes zoster<\/strong><\/a><\/p>\n

Rebecca T. Levinson, Todd Hulgan, Spyros A Kalams, Joshua P Fessel, David C. Samuels,\u00a0Open Forum Infectious Diseases<\/em>. 3(4)\u00a0<\/u><\/p>\n

 <\/p>\n

Practicability of mitochondrial heteroplasmy detection through an Illumina genotyping array<\/strong><\/a><\/p>\n

Pan Zhang, David C. Samuels<\/u>, Shilin Zhao, Jing Wang, Yu Shyr, Yan Guo, Mitochondrion<\/em><\/strong>, 75-78<\/p>\n

 <\/p>\n

Heterozygosity ratio, a robust global genomic measure of autozygosity and its association with height and disease risk<\/strong><\/a><\/p>\n

David C. Samuels<\/u>, Jing Wang, Fei Ye, Jing He, Rebecca T. Levinson, Quamhu Sheng, Shilin Zhao, John A. Capra, Yu Shyr, Wei Zheng, Yan Guo, Genetics<\/em><\/strong> 204(3) 893-904<\/p>\n

 <\/p>\n

2015<\/strong><\/p>\n

RNAseq by total RNA library identifies additional RNAs compared to poly(A) RNA library<\/strong><\/a><\/p>\n

Yan Guo, Shilin Zhao, Quanhu Sheng, Mingsheng Guo, Brian Lehmann, Jennifer Pietenpol, David C. Samuels<\/u>, Yu Shyr, Biomed Research International<\/em><\/strong> Article ID 862130<\/p>\n

 <\/p>\n

Genome measures used for quality control are dependent on gene function and ancestry<\/strong><\/a><\/p>\n

Jing Wang, Leon Raskin, David C. Samuels Yu Shyr, Yan Guo (2015) Bioinformatics\u00a0 <\/a><\/em><\/strong>31(3) 318-323<\/p>\n

 <\/p>\n

Alternative applications for distinct RNA sequencing strategies<\/strong><\/a><\/p>\n

Leng Han, Kasey C. Vickers, David C. Samuels, Yan Guo (2015) Briefings in Bioinformatics <\/a><\/em><\/strong>16(4) 629-639<\/p>\n

 <\/p>\n

Fine time scaling of purifying selection on human nonsynonymous mtDNA mutations based on the worldwide population tree and mother-child pairs.\u00a0<\/strong> <\/em><\/strong><\/a><\/p>\n

Bruno Cavadas, Pedro Soares, Rui Camacho, Andreia Brandao, Marta D. Costa, Veronica Fernandes, Joana B. Pereira, Teresa Rito, David C. Samuels<\/u>, Luisa Pereira Human Mutation <\/em><\/strong>36(11) 1100-1111<\/p>\n

 <\/p>\n

Mitochondrial DNA haplogroups and neurocognitive impairment during HIV infection<\/strong><\/a><\/p>\n

Todd Hulgan, David C. Samuels<\/u>, William Bush, Ronald J. Ellis, Scott L. Letendre, Robert K. Heaton, Donald R. Franklin, Peter Straub, Deborah G. Murdock, David B. Clifford, Ann C. Collier, Benjamin B. Gelmon, Christina M. Marra, Justin C. McArthur, J. Allen McCutchan, Susan, Morgello, David M. Simpson, Igor Grant & Asha R. Kallianpur for the CHARTER Group,\u00a0Clinical Infectious Diseases<\/em><\/strong> 61(9) 1476-1484<\/p>\n

 <\/p>\n

2014<\/strong><\/p>\n

Illumina human exome genotyping array clustering and quality control<\/strong><\/a><\/p>\n

Yan Guo, Jing He, Shilin Zhao, Hui Wu, Xue Zhong, Quanhu Sheng, David C. Samuels<\/span>, Yu Shyr, Jirong Long (2014), Nature Protocols<\/a><\/em><\/strong>, 9(11) 2643-2662.<\/p>\n

 <\/p>\n

Mitochondrial haplogroups are associated with severity of diabetic retinopathy<\/strong><\/a><\/p>\n

Christopher B. Estopinal, Isaac M. Chocron, Megan B. Parks, Emily A. Wade, Rachel M. Roberson, L. Goodwin Burgess, Milam A. Brantley Jr, David C. Samuels<\/span> (2014) Investigative Ophthalmology & Visual Science<\/a><\/em><\/strong> 55(9) 5589-5595<\/p>\n

 <\/p>\n

 <\/p>\n

Genetic Variation in iron metabolism is associated with neuropathic pain and pain severity in HIV-infected patients on antiretroviral therapy<\/strong><\/a><\/p>\n

Asha R. Kallianpur, Peilin Jia, Ronald J. Ellis, Zhongming Zhao, Cinnamon Bloss, Wanqing Wen, Christina M. Marra, Todd Hulgan, David M. Simpson, Susan Morgollo, Justin C. McArthur, David B. Clifford, Ann C. Collier, Benjamin B. Gelman, J. Allen, McCutchan, Donald Franklin, David C. Samuels<\/span>, Debralee Rosario, Emily Holzinger, Deborah G. Murdock, Scott Letendre, Igor Grant for the CHARTER Study Group, (2014) PLoS One<\/a><\/em><\/strong>, 9(8) e103123<\/p>\n

 <\/p>\n

High-throughput sequencing in mitochondrial DNA research<\/strong><\/a><\/p>\n

Fei Ye, David C. Samuels<\/span>, Travis Clark, Yan Guo (2014) Mitochondrion<\/a><\/em><\/strong> 17, 157-163<\/p>\n

 <\/p>\n

Data from artificial models of mitochondrial DNA disorders are not always applicable to humans<\/strong><\/a><\/p>\n

Julie Steffan, Nadine Gigarel, David C. Samuels<\/span>, Sophie Monnot, Roxana Borghese, Laetitia Hesters, Nelly Frydman, Philippe Burlet, Rene Frydman, Alexandra Benachi, Agnes Rotig, Arnold Munnich, Jean-Paul Bonnefont (2014) Cell Reports<\/a><\/em><\/strong> 7(4) 933-934<\/p>\n

 <\/p>\n

 <\/p>\n

Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential <\/strong><\/a><\/p>\n

Luisa Periera, Pedro Soares, Petr Triska, Teresa Rito, Agnes van der Waerden, Biao Li, Predrag Radivojac, David C Samuels<\/span> (2014), Scientific Reports<\/a><\/em><\/strong>. 4:7155<\/p>\n

 <\/p>\n

Epidermal nerve fiber density, oxidative stress and mitochondrial haplogroups in HIV-infected Thais initiating therapy<\/strong><\/p>\n

T. Hulgan, R.T. Levinson, M. Gerschenson, N. Phanuphak, J. Ananworanich, N. Teeratakulpisarm, T. Jadwattanakul, D.E. LiButti, H. Fink, J.C. McArthur, G.J. Ebenezer, P.Hauer, D. Murdock, C.M. Shikuma, D.C. Samuels<\/span>,. AIDS<\/a><\/em><\/strong> 28(11) 1625-1633.<\/p>\n

 <\/p>\n

High Proportion of Heteroresistance in gyrA<\/em> and gyrB<\/em> in fluoroquinolone resistant Mycobacterium tuberculosis <\/em>clinical isolates<\/strong><\/a><\/p>\n

Brandon Eilertson, Fernanda Maruri, Amondrea Blackman, Miguel Herrera, David C. Samuels<\/span>, Timothy R. Sterling, Antimicrobial Agents and Chemotherapy<\/a><\/em><\/strong> 58(6) 3270-3275<\/p>\n

 <\/p>\n

Mitochondrial DNA rearrangements in health and disease — A comprehensive study<\/a>
\n<\/strong><\/p>\n

Joana Damas, David C. Samuels<\/span>, Joao Carneiro, Antonio Amorim, Filipe Pereira (2014), Human Mutation<\/em><\/strong> 35(1) 1-14.<\/p>\n

 <\/p>\n

Multi-perspective quality control of Illumina exome sequencing data using QC3<\/strong><\/a><\/p>\n

Yan Guo, Shilin Zhao, Quanhu Sheng, Fei Ye, Jiang Li, Brian Lehmann, Jennifer Pientenpol, David C. Samuels, Yu Shyr (2014) Genomics<\/em><\/strong> 103(5-6) 323-328.<\/p>\n

 <\/p>\n

2013<\/strong><\/p>\n

The Other Genome: A Systematic Review of Studies of Mitochondrial DNA Haplogroups and Outcomes of HIV Infection and Antiretroviral Therapy.<\/strong><\/p>\n

Hart AB, Samuels DC<\/span>, Hulgan T (2013) AIDS Rev<\/a><\/em><\/strong>. 2013 Oct-Dec;15(4):213-20 PMID: 24322381<\/p>\n

 <\/p>\n

Recurrent tissue-specific mtDNA mutations are common in humans<\/strong><\/p>\n

David C. Samuels<\/span>, Chun Li, Bingshan Li, Zhuo Song, Eric Torstenson, Hayley Boyd Clay, Antonis Rokas, Tricia A Thortnon-Wells, Jason H. Moore, Tia M. Hughes, Robert D. Hoffman, Jonathan L. Haines, Deborah G. Murdock, Douglas P. Mortlock, Scott M. Williams (2013) PLoS Genetics<\/a><\/em><\/strong> 9(11) e1003929 PMC3820769.<\/p>\n

 <\/p>\n

Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control<\/strong><\/p>\n

Yan Guo, Quagho Sheng, David C. Samuels<\/span>, Brian Lehmann, Joshua Bauer, J.A. Pietenpol, Yu Shyr (2013), BioMed Research International.<\/a><\/em><\/strong><\/p>\n

 <\/p>\n

Three stage quality control strategies for DNA re-sequencing data<\/strong><\/p>\n

Yan Guo, Sheng Quanghu, Fei Ye, Travis Clark, David C. Samuels<\/span> (2013), Briefings in Bioinformatics<\/a><\/em><\/strong>. 15(6) 879-889<\/p>\n

 <\/p>\n

 <\/p>\n

Finding the Lost Treasures in Exome Sequencing Data<\/strong><\/p>\n

David C. Samuels<\/span>, Leng Han, Jiang Li, Sheng Quanhu, Travis A. Clark, Yu Shyr, Yan Gou (2013), Trends in Genetics<\/a>. <\/em><\/strong>29(10) 593-599<\/p>\n

 <\/p>\n

 <\/p>\n

Large scale comparisons of gene expression levels by microarrays and RNAseq using TCGA data<\/strong><\/p>\n

Yan Guo, Quanhu Sheng, Jiang Li, Fei Ye, David C. Samuels<\/span>, Yu Shyr (2013) PLoS One<\/a><\/em><\/strong>. 8(8) e71462<\/p>\n

 <\/p>\n

MitoSeek:<\/strong> Extracting mitochondria information and performing high-throughput mitochondria sequencing analysis<\/strong><\/p>\n

Yan Guo, Jiang Li, Chung-I Li, Yu Shyr, David C Samuels<\/span> (2013) Bioinformatics<\/a><\/em><\/strong>, 29 (9) 1210-1211.<\/p>\n

 <\/p>\n

Mutation dependence of the mitochondrial DNA copy number in the first stages of human embryogenesis<\/strong><\/p>\n

Sophie Monnot, David C. Samuels<\/span>, Laetitia Hesters, Nelly Frydman, Nadine Gigeral, Philippe Burlet, Violaine Kerbrat, Frederic Lamazou, Rene Frydman, Alexandra Benachi, Josue Feingold, Agnes Rotig, Arnold Munnich, Jean-Paul Bonnefont and Julie Steffann (2013), Human Molecular Genetics<\/a><\/em><\/strong>, 22 (9) 1867-1872.<\/p>\n

 <\/p>\n

Evaluating Purifying Selection in the Mitochondrial DNA of Various Mammalian Species<\/strong><\/p>\n

Pedro Soares, Diogo Abrantes, Teresa Rito, Noel Thomson, Predrag Radivojac, Biao Li, Vincent Macauley, David C. Samuels<\/span>, Luisa Pereira (2013), PLoS One<\/a><\/em><\/strong>, 8 (3), e58993 PMC3606437<\/p>\n

 <\/p>\n

Mitochondrial genomics and antiretroviral therapy-associated metabolic complications in HIV-infected black South Africans: a pilot study<\/strong><\/p>\n

Phumla Z. Sinxadi, Joel A. Dave, David C. Samuels<\/span>, Jeannine M. Heckmann, Gary Maartens, Naoimi S. Levitt, C. William Wester, David W. Haas, Todd Hulgan (2013) AIDS research and Human Retroviruses<\/a><\/em><\/strong>. 29 (7) 1031-1039 PMID 23428049<\/p>\n

 <\/p>\n

 <\/p>\n

Preventing the transmission of pathogenic mitochondrial DNA mutations: can we achieve long-term benefits from germ-line gene transfer?<\/strong><\/p>\n

David C. Samuels<\/span>, Passorn Wonnapinij, Patrick F. Chinnery (2013) Human Reproduction<\/a><\/em><\/strong> 28(3), 554-559. PMC3571501<\/p>\n

 <\/p>\n

 <\/p>\n

Evaluation of Allele Freqency Estimation Using Pooled Sequencing Data Simulation<\/strong><\/p>\n

Yan Guo, David C. Samuels<\/span>, Jiang Li, Travis Clark, Chung-I Li, Yu Shyr (2013), The Scientific World Journal<\/a><\/em><\/strong> article ID 895496 (9 pages). PMC3582166<\/p>\n

 <\/p>\n

Universal heteroplasmy of human mitochondrial DNA<\/strong><\/p>\n

Brendan A. I. Payne, Ian J. Wilson, Patrick Yu-Wai-Man, Jon Coxhead, David Deehan, Rita Horvath, Robert W. Taylor, David C. Samuels<\/span>, Mauro Santibanez-Koref, and Patrick F. Chinnery. (2013) Human Molecular Genetics<\/a><\/em><\/strong> 22(2) 384-390. PMC3526165<\/p>\n

 <\/p>\n

No evidence of an association between mitochondrial DNA variants and osteoarthritis in <\/strong>7410 cases and 5200 controls<\/strong><\/p>\n

Gavin Hudson, Kalliope Panoutsopoulou, Ian Wilson, Lorraine Southam, Nigel W. Rayner, Nigel Arden, Fraser Birrell, Ian Carluke, Andrew Carr, Kay Chapman, Panos Deloukas, Michael Doherty, Andrew McCaskie, William E.R. Ollier, Stuart H. Ralston, Mike R. Reed, Tim D. Spector, Ana M. Valdes, Gillian A. Wallis, J. Mark Wilkinson, Eleftheria Zeggini, arcOGEN Consortium, David C Samuels<\/span>, John Loughlin, Patrick F. Chinnery (2013), Annals of the Rheumatic Diseases<\/a><\/em><\/strong> (72) 136-139. PMC3551219<\/p>\n

 <\/p>\n

 <\/p>\n

2012<\/strong><\/p>\n

Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells<\/strong><\/p>\n

Anton K. Raap, Roshan S. Jahangor Tafrechi, Frans M. van de Rijke, Angela Pule, Carolina Wahlby, Karoly Szuhai, Raimond B.G. Ravelli, Rene F.M. de Coo, Harsha K. Rajasinha, Mats Nilsson, Patrick F. Chinnery, David C. Samuels<\/span> and George M.C. Janssen (2012), PLoS One<\/a><\/em><\/strong> 7(12) e52080 PMC3525564<\/p>\n

 <\/p>\n

The effect of strand bias in Illumina short-read sequencing data<\/strong><\/p>\n

Yan Guo, Jiang Li, Chung-I Li, Jirong Long, David C. Samuels<\/span>, Yu Shyr (2012), BMC Genomics<\/a> <\/em><\/strong>13:666. PMC3532123<\/p>\n

 <\/p>\n

Mitochondrial DNA variation and HIV-associated sensory neuropathy in CHARTER<\/strong><\/p>\n

Emily R. Holzinger, Todd Hulgan, Ronald J. Ellis, David C. Samuels<\/span>, Marylyn D. Ritchie, David W. Haas, Asha R. Kallianpur, Cinnamon S. Bloss, David B. Clifford, Ann C. Collier, Benjamin B. Gelman, Christina M. Marra, Justin C. McArthur, J. Allen McCutchan, Susan Morgello, David M. Simpson, Donald R. Franklin, Debralee Rosario, Doug Selph, Scott Letendre, and Igor Grant for the CHARTER Group (2012) Journal of NeuroVirology<\/a><\/em><\/strong> (18) 511-520 PMC3587171<\/p>\n

 <\/p>\n

 <\/p>\n

Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission<\/strong><\/p>\n

Christoph Freyer, Lynsey M Cree, Arnoud Mourier, James B Stewart, Camilla Koolmeister, Dusanka Milenkovac, David C Samuels<\/span>, Nils-Goran Larsson, Patrick F Chinnery (2012), Nature Genetics<\/a><\/em><\/strong> (44) 1282-1285. PMC3492742<\/p>\n

 <\/p>\n

 <\/p>\n

What is influencing the phenotype of the common homozygous polymerase gamma mutation p.Ala467Thr?<\/strong><\/p>\n

Vivienne C.M. Neeve, David C. Samuels<\/span> Laurence Bindoff, Bianca van den Bosch, Gert Van Goethem, Bert Smeets, Anne Lombes, Michio Hirano, Salvatore DiMauro, Maaike De Vries, Jan Smeitink, Bart Smits, Carsten Saft, Bianca-Cortina Keiling, Birgit Czermin, Angela Abicht, Hanns Lochm\u00fcller, Gavin Hudson, Grainne G. Gorman, Doug M. Turnbull, Robert W. Taylor, Elke Holinski-Feder, Patrick F. Chinnery, Rita Horvath (2012) Brain<\/a><\/em><\/strong> (135) 3614-3626. PMC3525059<\/p>\n

 <\/p>\n

 <\/p>\n

T cell Activation Markers and African Mitochondrial DNA Haplogroups among Non-Hispanic Black Participants in AIDS Clinical Trials Group Study 384<\/strong><\/p>\n

Todd Hulgan, Gregory K. Robbins, Spyros A. Kalams, David C. Samuels<\/span>, Benjamin Grady, Robert Shafer, Deborah G. Murdock, Doug Selph, David W. Haas, and Richard B. Pollard for the AIDS Clinical Trials Group. (2012) PLoS One<\/a><\/em> <\/strong>7(8) article e43803. PMC3433792<\/p>\n

 <\/p>\n

 <\/p>\n

Unique mitochondrial DNA in highly inbred feral cattle<\/strong><\/p>\n

G. Hudson, I. Wilson, B.I.A. Payne, J. Elson, D.C. Samuels<\/span>, M.Santibanez-Korev, S.J.G. Hall, P.F. Chinnery (2012), Mitochondrion<\/a> <\/em><\/strong>12, 438-440.<\/p>\n

 <\/p>\n

Risk Factors for Symptomatic Hyperlactatemia and Lactic Acidosis Among Combination Antiretroviral Therapy-Treated Adults in Botswana: Results From a Clinical Trial<\/strong><\/p>\n

C.W. Wester, S.K. Eden, B.E. Shepherd, H. Bussman, V. Novitsky, D.C. Samuels<\/span>, S.L. Hendrickson, C.A. Winkler, S.J. O\u2019Brien, M. Essex, R.T. D\u2019Aquila, V. deGruttola, R. G. Marlink (2012) AIDS Research and Human Retroviruses<\/a><\/em><\/strong> 28, 759-765.<\/p>\n

 <\/p>\n

 <\/p>\n

Adult onset spinocerebellar ataxia syndromes due to MTATP6 mutations<\/strong><\/p>\n

G. Pfeffer, A. Hassani, E.L. Blakely, C.L. Alston, M. Boggild, R. Horvath, D.C. Samuels<\/span>, R.W. Taylor, P.F. Chinnery (2012), Journal of Neurology, Neurosurgery and Psychiatry<\/a> <\/em><\/strong>83, 883-886.<\/p>\n

 <\/p>\n

 <\/p>\n

The use of next-generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation<\/strong><\/p>\n

Y. Guo, Q. Cai, D.C. Samuels<\/span>, F. Ye, J. Long, C.-I. Li, J.F. Winther, E.J. Tawn, M. Stovall, P. Lahteenmaki, N. Malia, S. Levy, C. Shaffer, Y. Shyr, X. Shu, J.D. Boice Jr (2012) Mutation Research \u2013 Genetic Toxicology and Environmental Mutagenesis<\/a><\/em><\/strong> 744, 154-160. PMC3354959<\/p>\n

 <\/p>\n

 <\/p>\n

Mitochondrial DNA deletions are associated with non-B DNA conformations<\/strong><\/p>\n

J. Damas, J. Carneiro, J. Goncalves, J.B.\u00a0 Stewart, D.C. Samuels<\/span>, A. Amorim, F. Pereira (2012), Nucleic Acids Research<\/a><\/em><\/strong> 40(16) 7606-7621. PMC3439893<\/p>\n

 <\/p>\n

Somatic mitochondrial DNA mutations in cancer escape purifying selection and high pathogenicity mutations lead to the oncocytic phenotype: pathogenicity analysis of reported somatic mtDNA mutations in tumors<\/strong><\/p>\n

L. Periera, P. Soares, V. Maximo, D.C. Samuels<\/span> (2012), BMC Cancer<\/a><\/em><\/strong> 12:53 (10 pages). PMC3342922<\/p>\n

 <\/p>\n

Correlated Tissue Expression of Genes of Cytoplasmic and Mitochondrial Nucleotide Metabolisms in Normal Tissues is Disrupted in Transformed Tissues<\/strong><\/p>\n

V.V. Gandhi, D.C. Samuels<\/span> (2012), Nucleosides, Nucleotides and Nucleic Acids<\/a><\/em><\/strong> 31, 112-129.<\/em><\/strong> PMC3464496<\/p>\n

 <\/p>\n

Epigenetics, epidemiology and mitochondrial DNA diseases<\/strong><\/p>\n

P.F. Chinnery, H.R. Elliot, G. Hudson, D.C. Samuels, C.L. Relton (2012), International Journal of Epidemiology<\/a> <\/strong>41, 177-187.<\/p>\n

 <\/p>\n

 <\/p>\n

2011<\/strong><\/p>\n

Replication Pauses of the Wild-Type and Mutant Mitochondrial DNA Polymerase Gamma: A Simulation Study<\/strong><\/p>\n

Z. Song, Y. Cao, D.C. Samuels (2011), PLoS Computational Biology<\/a> <\/em><\/strong>7(11), e1002287.<\/p>\n

 <\/p>\n

Mitochondrial Genomics and CD4 T-cell count recovery after antiretroviral therapy initiation in AIDS clinical trials group study 384<\/strong><\/p>\n

B.J. Grady, D.C. Samuels<\/span>, G.K. Robbins, D. Selph, J.A. Canter, R.B. Pollard, D.W. Haas, R. Shafer, S.A. Kalams, D.G. Murdock, M.D. Ritchie, T.\u00a0 Hulgan (2011), Journal of AIDS<\/a><\/em><\/strong> 58(4), 363-370. PMC3204178<\/p>\n

 <\/p>\n

Enzyme kinetics of the mitochondrial deoxyribonucleoside salvage pathway are not sufficient to support rapid mtDNA replication<\/strong><\/p>\n

V.V. Gandhi, D.C. Samuels<\/span> (2011), PLoS Computational Biology<\/a><\/em><\/strong> 7(8), e1002078. PMC3150320<\/p>\n

 <\/p>\n

A review comparing deoxyribonucleoside triphosphate (dNTP) concentrations in the mitochondrial and cytoplasmic compartments of normal and transformed cells<\/strong><\/p>\n

V.V. Gandhi, D.C. Samuels<\/span> (2011) Nucleosides, Nucleotides and Nucleic Acids<\/a><\/em><\/strong> 30(5), 317-339. PMC3210641<\/p>\n

 <\/p>\n

Mitochondrial aging is accelerated by anti-retroviral therapy through clonal expansion of mtDNA mutations<\/strong><\/p>\n

B.A.I. Payne, I.J. Wilson. C.A. Hateley, R. Horvath, M. Santibanez-Koref, D.C. Samuels<\/span>, D.A. Price, P.F. Chinnery (2011), Nature Genetics<\/a><\/em><\/strong> 43 (8), 806-810. PMC3223397<\/p>\n

 <\/p>\n

 <\/p>\n

Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity<\/strong><\/p>\n

L. Pereira, P. Soares, P. Radivojac, B. Li, D.C. Samuels<\/span> (2011), American Journal of Human Genetics<\/a><\/em><\/strong> 88, 433-439. PMC3071914<\/p>\n

 <\/p>\n

 <\/p>\n

Poor Correlations in the levels of pathogenic mitochondrial DNA mutations in polar bodies versus oocytes and blastomeres in humans<\/strong><\/p>\n

N. Gigarel, L. Hester, D.C. Samuels<\/span>, S. Monnot, P. Burlet, V. Kerbrat, F. Lamazou, A. Benachi, R. Frydman, J. Feingold, A. Rotig, A. Munnich, J.P. Bonnefont, N. Frydman, J. Steffann (2011) American Journal of Human Genetics<\/a><\/em><\/strong> 88, 494-498.<\/p>\n

 <\/p>\n

 <\/p>\n

Segregation of mtDNA throughout human embryofetal development: m3243A>G as a model system<\/strong><\/p>\n

S. Monnot, N. Gigarel, D.C. Samuels<\/span>, P. Burlet, L. Hesters, N. Frydman, R. Frydman, V. Kerbrat, B. Funalot, J. Martinovic, A. Benachi, J. Feingold, A. Munnich, J-P. Bonnefont, J. Steffann. (2011) Human Mutation<\/a><\/em><\/strong> 32(1), 116-125. PMC3058134.<\/p>\n

 <\/p>\n

POLG mutations cause decreased mitochondrial DNA repopulation rates following induced depletion in human fibroblasts<\/strong><\/p>\n

J.D. Stewart, S, Schoeler, K.S. Sitarz, R. Horvath, K. Hallmann, A. Pyle, P. Yu-Wai-Man, R.W. Taylor, D.C. Samuels<\/span>, W.S. Kunz, P.F. Chinnery (2011), Biochemica et Biophysica Acta<\/a><\/em><\/strong> 1812, 321-325. PMID:21138766.<\/p>\n

 <\/p>\n

The BCL-2-associated death promoter (BAD) lowers the threshold at which the BCL-2-interacting domain death agonist (BID) triggers mitochondria disintegration<\/strong><\/p>\n

C.C. Howells, W.T. Baumann, D.C. Samuels<\/span>, C.V. Finkielstein (2011), Journal of Theoretical Biology<\/a><\/em><\/strong> 271, 114-123. PMID:21130780.<\/p>\n

 <\/p>\n

2010<\/strong><\/p>\n

OPA1 mutations cause cytochrome c oxidase deficiency due to loss of wild-type mtDNA molecules<\/strong><\/p>\n

P. Yu-Wai-Man, K.S. Sitarz, D.C. Samuels<\/span>, P.G. Griffiths, A.K. Reeve, L.A. Bindoff, R. Horvath, P.F. Chinnery (2010), Human Molecular Genetics<\/a><\/em><\/strong> 19(15), 3043-3052. PMC2901142.<\/p>\n

 <\/p>\n

 <\/p>\n

Reassessing evidence for a postnatal mitochondrial genetic bottleneck<\/strong><\/p>\n

D.C. Samuels<\/span>, P. Wonnapinij, L.M. Cree, P.F. Chinnery, (2010), Nature Genetics<\/a><\/em><\/strong> 42(6), 471-472. PMID:20502486.<\/p>\n

 <\/p>\n

Analysis of enzyme kinetic data for mtDNA replication<\/strong><\/p>\n

Z. Song, D.C. Samuels, (2010), Methods<\/a><\/em><\/strong> 51(4), 385-391. PMC2903644<\/p>\n

 <\/p>\n

 <\/p>\n

Information for genetic management of mtDNA disease: Sampling pathogenic mtDNA mutants in the human germline and in placenta<\/strong><\/p>\n

D.R. Marchington, S. Malik, A. Banerjee, K, Turner, D. Samuels<\/span>, V. Macauley, P Oakeshott, C. Fratter, S.H. Kennedy, J. Poulton (2010) Journal of Medical Genetics<\/a><\/em><\/strong>, 47, 257-261.<\/p>\n

 <\/p>\n

 <\/p>\n

Previous estimates of mitochondrial DNA mutation level variance did not account<\/strong> for sampling error: Comparing the mtDNA genetic bottleneck in mice and humans<\/strong><\/p>\n

P. Wonnapinij, P.F. Chinnery, D.C. Samuels<\/span> (2010), American Journal of Human Genetics<\/a> <\/em><\/strong>86(4) 540-550. PMC2850432.<\/p>\n

 <\/p>\n

 <\/p>\n

2009
\nThe diversity present in 5140 human mitochondrial genomes<\/strong><\/p>\n

L. Pereira, F. Freitas, V. Fernandes, J.B. Pereira, M.D. Costa, S. Costa, V. Maximo, V. Macaulay, R. Rocha, D.C. Samuels<\/span> (2009) American Journal of Human Genetics<\/a> <\/em><\/strong>84 (5) 628-640. PMC2681004.<\/p>\n

 <\/p>\n

 <\/p>\n

The inheritance of pathogenic mitochondrial DNA mutations<\/strong><\/p>\n

L.M. Cree, D.C. Samuels<\/span>, P.F. Chinnery (2009) Biochemica et Biophysica Acta \u2013 Molecular Basis of Disease<\/a><\/em><\/strong> 1792 (12), 1097-1102. PMC2785871.<\/p>\n

 <\/p>\n

Discrete stochastic simulation methods for chemically reacting systems<\/strong><\/p>\n

Y. Cao, D.C. Samuels<\/span> (2009), Methods in Enzymology<\/a><\/em><\/strong>, 454, 115-140. PMID:19216925.<\/p>\n

 <\/p>\n

 <\/p>\n

Detecting new neurodegenerative disease genes: Does phenotype accuracy limit the horizon?<\/strong><\/p>\n

D.C. Samuels<\/span>, D.J. Burn, P.F. Chinnery (2009) Trends in Genetics<\/a><\/em><\/strong> 25 (11) 486-488. PMC2824109.<\/p>\n

 <\/p>\n

 <\/p>\n

An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcriptase Inhibitors<\/strong><\/p>\n

K.V. Wendelsdorf, Z. Song, Y. Cao, D.C. Samuels<\/span> (2009), PLOS Computational Biology<\/a><\/em><\/strong> 5(1) e1000261. PMC2603287.<\/p>\n

 <\/p>\n

 <\/p>\n

The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo<\/em><\/strong><\/p>\n

X. Guan, P. Silva, O. Ho-Shing, K.B. Gyenai, J. Xu, T. Geng, Z. Tu, D.C. Samuels<\/span>, O.E. Rhodes, E.J. Smith (2009), Animal Genetics<\/a><\/em><\/strong> 40(2): 134-141. PMC2664387.<\/p>\n

 <\/p>\n

 <\/p>\n

2008<\/strong><\/p>\n

The Distribution of Mitochondrial DNA Heteroplasmy Due to Random Genetic Drift<\/strong><\/p>\n

P. Wonnapinij, P.F. Chinnery, D.C. Samuels<\/span> (2008), American Journal of Human Genetics<\/a> <\/em><\/strong>83: 582-593. PubMed PMID:18976726; PMC2668051.<\/p>\n

 <\/p>\n

Evidence for variable selection pressures at a large secondary structure of the human mitochondrial DNA control region<\/strong><\/p>\n

F. Pereira, P. Soares, J. Carneiro, L. Pereira, M.B. Richards, D.C. Samuels<\/span>, A. Amorim, (2008), Molecular Biology and Evolution<\/a><\/em><\/strong> 25(12): 2759-2770. PMID:18845547.<\/p>\n

 <\/p>\n

Pathogenic mitochondrial DNA mutations are common in the general public<\/strong><\/p>\n

H.R. Elliot, D.C. Samuels<\/span>, J.A. Eden, C.L. Relton, P.F. Chinnery (2008). American Journal of Human Genetics<\/a><\/em><\/strong> 83: 254-260. PMC2495064.<\/p>\n

 <\/p>\n

What causes mitochondrial DNA deletions in human cells?<\/strong><\/p>\n

K.J. Krishnan, A.K. Reeve, D.C. Samuels<\/span>, P.F. Chinnery, J.K. Blackwood, R.W. Taylor, S. Wanrooj, J.N. Spelbrink, R.N. Lightowlers, D.M. Turnbull (2008) Nature Genetics<\/a><\/em><\/strong> 40 (3): 275-279. PMID:18305478.<\/p>\n

 <\/p>\n

The evidence that the DNC (SLC25A19) is not the mitochondrial deoxyribonucleotide carrier<\/strong><\/p>\n

J. Kang and D.C. Samuels<\/span> (2008), Mitochondrion<\/a><\/em><\/strong> 8: 103-108.PMID:18280798.<\/p>\n

 <\/p>\n

A reduction in the number of mitochondrial DNA molecules during embryogenesis explains the rapid segregation of genotypes<\/strong><\/p>\n

L.M. Cree, D.C. Samuels<\/span>, S.C. de Sousa-Lopes, H.K. Rajasimha, P. Wonnapinij, J.R. Mann, H.H.M. Dahl, P.F. Chinnery (2008) Nature Genetics<\/a><\/em><\/strong> 40 (2): 249-254. PMID:18223651.<\/p>\n

 <\/p>\n

Selection against pathogenic mtDNA mutations in a stem cell population leads to the loss of the 3243A>G mutation in blood<\/strong><\/p>\n

H.K. Rajasimha, P.F. Chinnery, D.C. Samuels<\/span> (2008), American Journal of Human Genetics<\/a><\/em><\/strong> 82: 333-343. PMC2427290.<\/p>\n

 <\/p>\n

2007<\/strong><\/p>\n

Normal levels of wild-type mitochondrial DNA maintain cytochrome c oxidase activity for two pathogenic mitochondrial DNA mutations but not for m.3243A -> G<\/strong><\/p>\n

S.E. Durham<\/a>, D.C. <\/span>Samuels<\/a><\/span>, L.M. Cree<\/a>, P.F. Chinnery (2007) <\/a> American Journal of Human Genetics<\/a><\/em> <\/strong>81 (1): 189-195. PMC1950909.<\/p>\n

 <\/p>\n

Depletion of mitochondrial DNA in leucocytes harbouring the 3243A -> G mtDNA mutation<\/strong><\/p>\n

A. Pyle, R.W. Taylor, S.E. Durham, M. Deschauer, A.M. Schaefer, D.C. Samuels<\/span>, P.F. Chinnery (2007), Journal of Medical Genetics<\/a><\/em><\/strong> 44 (1): 69-74. PMC2597915.<\/p>\n

 <\/p>\n

 <\/p>\n

Computational models of antiviral toxicity<\/strong><\/p>\n

D.C. Samuels<\/span> (2007), Current Opinion in Drug Discovery & Development<\/em><\/strong> 10 (1): 43-48. PMID:17265740.<\/p>\n

 <\/p>\n

 <\/p>\n

2006<\/strong><\/p>\n

Mitochondrial AZT metabolism<\/strong><\/p>\n

D.C. Samuels<\/span> (2006), IUBMB Life<\/a><\/em><\/strong> 58 (7): 403-408. PMID:16801215.<\/p>\n

 <\/p>\n

Is selection required for the accumulation of somatic mitochondrial DNA mutations in post-mitotic cells?<\/strong><\/p>\n

S.E. Durham, D.C. Samuels<\/span>, P.F. Chinnery (2006) Neuromuscular Disorders<\/a><\/em><\/strong> 16 (6): 381-386. PMID:16684599.<\/p>\n

 <\/p>\n

 <\/p>\n

The power to detect disease associations with mitochondrial DNA haplogroups<\/strong><\/p>\n

D.C. Samuels<\/span>, A.D. Carothers, R. Horton, P.F. Chinnery (2006) American Journal of Human Genetics<\/a><\/em><\/strong> 78 (4): 713-720. PMC1424681.<\/p>\n

 <\/p>\n

2005<\/strong><\/p>\n

A computational model of mitochondrial AZT metabolism<\/strong><\/p>\n

P.C. Bradshaw, J.X. Li, D.C. Samuels<\/span> (2005) Biochemical Journal<\/a><\/em><\/strong> 392: 363-373. PMC1316272.<\/p>\n

 <\/p>\n

Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich<\/strong><\/p>\n

P.C. Bradshaw, A. Rathi, D.C. Samuels<\/span> (2005), BMC Genomics<\/a><\/em><\/strong> 6: Art. No. 136. PMC1262711.<\/p>\n

 <\/p>\n

Life span is related to the free energy of mitochondrial DNA<\/strong><\/p>\n

D.C. Samuels<\/span> (2005), Mechanisms of Ageing and Development<\/a><\/em><\/strong> 126 (10): 1123-1129. PMID:15992863.<\/p>\n

 <\/p>\n

Mitochondrial DNA copy number threshold in mtDNA depletion myopathy<\/strong>,<\/p>\n

S. Durham, E. Bonilla, D.C. Samuels<\/span>, S. DiMauro, P.F. Chinnery (2005), Neurology<\/a><\/em><\/strong> 65 (3): 453-455. PMID:16087914<\/p>\n

 <\/p>\n

A computational model of mitochondrial deoxynucleotide metabolism and DNA replication<\/strong><\/p>\n

P.C. Bradshaw, D.C. Samuels<\/span> (2005), The American Journal of Physiology: Cell Physiology<\/a><\/em><\/strong> 288: 989-1002. PMID:15634740.<\/p>\n

 <\/p>\n

 <\/p>\n

2004<\/strong><\/p>\n

Two direct repeats cause most human mtDNA deletions<\/strong><\/p>\n

D.C. Samuels<\/span>, <\/strong>E.A. Schon, P.F. Chinnery (2004), Trends in Genetics<\/a><\/em><\/strong> 20 (9): 393-398. PMID:15313545.<\/p>\n

 <\/p>\n

 <\/p>\n

Mitochondrial DNA repeats constrain the life span of mammals<\/strong><\/p>\n

D.C. Samuels<\/span> (2004), Trends in Genetics<\/a><\/em><\/strong> 20 (5): 226-229. PMID:15109774.<\/p>\n

 <\/p>\n

Scaling laws of vortex reconnections<\/strong><\/p>\n

C.F. Barenghi, D.C. Samuels<\/span> (2004), Journal of Low Temperature Physics<\/a><\/em><\/strong> 136 (5-6): 281-293.<\/p>\n

 <\/p>\n

 <\/p>\n

2003<\/strong><\/p>\n

A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate<\/strong><\/p>\n

D.C. Samuels<\/span>, R.J. Boys, D.A. Henderson, P.F. Chinnery (2003),<\/strong> Nucleic Acids Research<\/a><\/em> <\/strong>31 (20): 6043-6052. PMC219467.<\/p>\n

 <\/p>\n

Mitochondrial DNA mutations in human colonic crypt stem cells<\/strong><\/p>\n

R.W. Taylor, M.J. Barron, G.M. Borthwick, A. Gospel, P.F. Chinnery, D.C. Samuels<\/span>, G.A. Taylor, S.M. Plusa, S.J. Needham, L.C. Greaves, T.B.L. Kirkwood, D.M. Turnbull (2003) Journal of Clinical Investigation<\/a><\/em> <\/strong>112 (9): 1351-1360. PMC228466.<\/p>\n

 <\/p>\n

A model of the nuclear control of mitochondrial DNA replication<\/strong>,<\/p>\n

G.J. Capps, D.C. Samuels<\/span>, P.F. Chinnery (2003) Journal of Theoretical Biology<\/a><\/em> <\/strong>221 (4): 565-583. PMID:12713941.<\/p>\n

 <\/p>\n

Geometry and topology of superfluid turbulence<\/strong><\/p>\n

D.R. Poole, H. Scoffield, C.F. Barenghi, D.C. Samuels<\/span> (2003), Journal of Low Temperature Physics<\/a><\/em><\/strong> 132 (1-2): 97-117.<\/p>\n

 <\/p>\n

Decay of superfluid turbulence via Kelvin-wave radiation<\/strong><\/p>\n

M. Leadbeater, D.C. Samuels<\/span>, C.F. Barenghi, C.S. Adams (2003), Physical Review A<\/a><\/em><\/strong> 67 (1): #015601.<\/p>\n

 <\/p>\n

2002<\/strong><\/p>\n

Mitochondrial DNA mutations accumulate in ageing, cancer and mitochondrial disease: Is there a common mechanism?<\/strong><\/p>\n

P.F. Chinnery, D.C. Samuels<\/span>, J.L. Elson, D.M. Turnbull (2002) Lancet<\/a><\/em> <\/strong>360 (9342): 1323-1325. PMID:12414225.<\/p>\n

 <\/p>\n

The length of cytochrome<\/strong> c oxidase negative segments in muscle fibres in patients with mtDNA myopathy<\/strong><\/p>\n

J.L. Elson, D.C. Samuels<\/span>, M.A. Johnson, D.M. Turnbull, P.F. Chinnery (2002), Neuromuscular Disorders<\/a><\/em><\/strong> 12 (9): 858-864. PMID:12398838.<\/p>\n

 <\/p>\n

Polarization of superfluid turbulence<\/strong><\/p>\n

C.F. Barenghi, S. Hulton, D.C. Samuels<\/span> (2002), Physical Review Letters<\/a><\/em><\/strong> 89 (27): #275301. PMID:12513214.<\/p>\n

 <\/p>\n

Evaporation of a packet of quantized vorticity<\/strong><\/p>\n

C.F. Barenghi, D.C. Samuels<\/span> (2002), Physical Review Letters<\/a> <\/em><\/strong>89 (15): #155302. PMID:12365997.<\/p>\n

 <\/p>\n

Velocity spectra of superfluid turbulence<\/strong><\/p>\n

D. Kivotides, C.J. Vassilicos, D.C. Samuels<\/span>, C.F. Barenghi (2002), Europhysics Letters<\/a><\/em><\/strong> 57 (6): 845-851.<\/p>\n

 <\/p>\n

 <\/p>\n

Superfluid vortex reconnections<\/strong><\/p>\n

C.F. Barenghi, D.C. Samuels<\/span>, D. Kivotides (2002), Journal of Low Temperature Physics<\/a><\/em><\/strong> 126 (1-2): 271-279.<\/p>\n

 <\/p>\n

2001<\/strong><\/p>\n

Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age<\/strong><\/p>\n

J.L. Elson, D.C. Samuels<\/span>, D.M. Turnbull, P.F. Chinnery (2001), American Journal of Human Genetics<\/a><\/em><\/strong> 68: 802-806. PMC1274494.<\/p>\n

 <\/p>\n

Random genetic drift determines the level of mutant mitochondrial DNA in human primary oocytes<\/strong><\/p>\n

D.T. Brown, D.C. Samuels<\/span>, E.M. Michael, D.M. Turnbull, P.F. Chinnery (2001), American Journal of Human Genetics<\/a><\/em><\/strong> 68: 533-536. PMC1235288.<\/p>\n

 <\/p>\n

Quantum signature of superfluid turbulence<\/strong><\/p>\n

D. Kivotides, J.C. Vassilicos, C.F. Barenghi, M.A.I. Khan, D.C. Samuels<\/span> (2001), Physical Review Letters<\/a><\/em><\/strong> 87 (27): #275302. PMID:11800889<\/p>\n

 <\/p>\n

A new interpretation of oscillating flow experiments in superfluid helium II<\/strong><\/p>\n

S.P. Godfrey, D.C. Samuels<\/span> (2001), Journal of Low Temperature Physics<\/a><\/em><\/strong> 125 (1-2): 69-85.<\/p>\n

 <\/p>\n

Fractal dimension of superfluid turbulence<\/strong><\/p>\n

D. Kivotides, C.F. Barenghi, D.C. Samuels<\/span> (2001), Physical Review Letters<\/a><\/em><\/strong> 87 (15): #155301. PubMed PMID:11580706.<\/p>\n

 <\/p>\n

How tangled is a tangle?<\/strong><\/p>\n

C.F. Barenghi, R.L. Ricca, D.C. Samuels<\/span> (2001) Physica D<\/a><\/em><\/strong> 157 (3): 197-206.<\/p>\n

 <\/p>\n

Superfluid vortex reconnections at finite temperature<\/strong><\/p>\n

D. Kivotides, C.F. Barenghi, D.C. Samuels<\/span> (2001), Europhysics Letters<\/a><\/em><\/strong> 54 (6): 774-778.<\/p>\n

 <\/p>\n

Linear stability of laminar plane Poiseuille flow of helium II under a nonuniform mutual friction forcing<\/strong><\/p>\n

S.P. Godfrey, D.C. Samuels<\/span>, C.F. Barenghi (2001), Physics of Fluids<\/a><\/em><\/strong> 13 (4): 983-990.<\/p>\n

 <\/p>\n

Kelvin waves cascade in superfluid turbulence<\/strong><\/p>\n

D. Kivotides, J.C. Vassilicos, D.C. Samuels<\/span>, C.F. Barenghi (2001), Physical Review Letters<\/a><\/em><\/strong> 86 (14): 3080-3083. PMID:11290112.<\/p>\n

 <\/p>\n

Sound emission due to superfluid vortex reconnections<\/strong><\/p>\n

M. Leadbeater, T. Winiecki, D.C. Samuels<\/span>, C.F. Barenghi, C.S. Adams (2001), Physical Review Letters<\/a><\/em><\/strong> 86 (8): 1410-1413. PMID:11290155.<\/p>\n

 <\/p>\n

Formation and decay of vorticity in coupled helium-II flow<\/strong><\/p>\n

O.C. Idowu, K.L. Henderson, D.C. Samuels<\/span> (2001), Physical Review B<\/a><\/em><\/strong> 63 (2): #024513.<\/p>\n

 <\/p>\n

2000<\/strong><\/p>\n

The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both?<\/strong><\/p>\n

P.F. Chinnery, D.R. Thorburn, D.C. Samuels<\/span>, S.L. White, H.H.M. Dahl, D.M. Turnbull, R.N. Lightowlers, N. Howell (2000) Trends in Genetics<\/a><\/em><\/strong> 16: 500-505. PMID:11074292.<\/p>\n

 <\/p>\n

Can superfluid vortex lines excite normal fluid turbulence in He-4?<\/strong><\/p>\n

C.F. Barenghi, D. Kivotides, O.C. Idowu, D.C. Samuels<\/span> (2000) Journal of Low Temperature Physics<\/em><\/strong> 121 (5-6): 377-386.<\/p>\n

 <\/p>\n

Triple vortex ring structure in superfluid helium II<\/strong><\/p>\n

D. Kivotides, C.F. Barenghi, D.C. Samuels<\/span> (2000), Science<\/a><\/em><\/strong> 290 (5492): 777-779. PMID:11052935.<\/p>\n

 <\/p>\n

Equation for self-consistent superfluid vortex line dynamics<\/strong><\/p>\n

O.C. Idowu, D. Kivotides, C.F. Barenghi, D.C. Samuels<\/span>, (2000) Journal of Low Temperature Physics<\/a><\/em><\/strong> 120 (3-4): 269-280.<\/p>\n

 <\/p>\n

Local normal fluid helium II flow due to mutual friction interaction with the superfluid<\/strong><\/p>\n

O.C. Idowu, A. Willis, C.F. Barenghi, D.C. Samuels<\/span> (2000), Physical Review B<\/a><\/em><\/strong> 62 (5): 3409-3415.<\/p>\n

 <\/p>\n

Stable superfluid vortex filament structures in laminar boundary layer flow of helium II<\/strong><\/p>\n

S.P. Godfrey, D.C. Samuels<\/span> (2000), Physical Review B<\/a><\/em><\/strong> 61 (6): 4190-4195.<\/p>\n

 <\/p>\n

1999<\/strong><\/p>\n

Relaxed replication of mtDNA: A model with implications for the expression of disease<\/strong><\/p>\n

P.F. Chinnery, D.C. Samuels<\/span> (1999), American Journal of Human Genetics<\/a><\/em><\/strong> 64: 1158-1165. PMC1377840.<\/p>\n

 <\/p>\n

 <\/p>\n

A damping length scale for superfluid turbulence<\/strong><\/p>\n

D.C. Samuels<\/span>, D. Kivotides (1999) Physical Review Letters<\/a><\/em><\/strong> 83 (25): 5306-5309.<\/p>\n

 <\/p>\n

Evolution of vortex knots<\/strong><\/p>\n

R.L. Ricca, D.C. Samuels<\/span>, C.F. Barenghi (1999), Journal of Fluid Mechanics<\/a><\/em><\/strong> 391: 29-44.<\/p>\n

 <\/p>\n

Self consistent decay of superfluid turbulence<\/strong><\/p>\n

C.F. Barenghi, D.C. Samuels<\/span> (1999), Physical Review B<\/a><\/em><\/strong> 60 (2): 1252-1260.<\/p>\n

 <\/p>\n

1998<\/strong><\/p>\n

Instabilities during the dendritic and axonal development of neuronal form<\/strong><\/p>\n

H.G.E. Hentschel, D Samuels, A Fine (1998) Physica A \u2013 Statistical Mechanics and its Applications<\/a><\/em><\/strong> 254 (1-2): 46-64.<\/p>\n

 <\/p>\n

 <\/p>\n

Vortex heating in superfluid helium at low temperatures<\/strong><\/p>\n

D.C. Samuels<\/span>, C.F. Barenghi (1998), Physical Review Letters<\/a><\/em><\/strong> 81 (20): 4381-4383.<\/p>\n

 <\/p>\n

 <\/p>\n

A finite length instability of vortex tubes<\/strong><\/p>\n

D.C. Samuels<\/span> (1998), European Journal of Mechanics B \u2013 Fluids<\/a><\/em><\/strong> 17 (4): 587-594.<\/p>\n

 <\/p>\n

 <\/p>\n

Quantized vortex knots<\/strong><\/p>\n

D.C. Samuels<\/span>, C.F. Barenghi, R.L. Ricca (1998), Journal of Low Temperature Physics<\/a><\/em><\/strong> 110 (1-2): 509-514.<\/p>\n

 <\/p>\n

1997<\/strong><\/p>\n

The axon as a metabolic compartment: Protein degradation, transport, and the maximum length of an axon<\/strong><\/p>\n

K.E. Miller, D.C. Samuels<\/span> (1997), Journal of Theoretical Biology<\/a><\/em><\/strong> 186: 373-379. PMID:9219672.<\/p>\n

 <\/p>\n

Superfluid vortex lines in a model of turbulent flow<\/strong><\/p>\n

C.F. Barenghi, D.C. Samuels<\/span>, GH Bauer, RJ Donnelly (1997), Physics of Fluids<\/a><\/em><\/strong> 9 (9): 2631-2643.<\/p>\n

 <\/p>\n

 <\/p>\n

1996<\/strong><\/p>\n

The origin of neuronal polarization: A model of axon formation<\/strong><\/p>\n

D.C. Samuels<\/span>, H.G.E. Hentschel, A. Fine (1996) Philosophical Transactions of the Royal Society B<\/a><\/em><\/strong> 351: 1147-1156. PMID:8899865.<\/p>\n

 <\/p>\n

 <\/p>\n

1994<\/strong><\/p>\n

Momentum statistics of interacting rotons<\/strong><\/p>\n

G.H. Bauer, D.C. Samuels, R.J. Donnelly (1994) Physica B<\/a><\/em><\/strong> 194 519-520<\/p>\n

 <\/p>\n

1993<\/strong><\/p>\n

Response of superfluid vortex filaments to concentrated normal-fluid vorticity<\/strong><\/p>\n

D.C. Samuels<\/span> (1993), Physical Review B<\/a><\/em><\/strong> 47 (2): 1107-1110. PMID:10005596.<\/p>\n

 <\/p>\n

 <\/p>\n

1992<\/strong><\/p>\n

Velocity matching and Poiseuille pipe-flow of superfluid-helium<\/strong><\/p>\n

D.C. Samuels<\/span> (1992), Physical Review B<\/a><\/em><\/strong> 46 (18): 11714-11724. PMID:10003062.<\/p>\n

 <\/p>\n

 <\/p>\n

1991<\/strong><\/p>\n

Motion of charged vortex rings in helium II<\/strong><\/p>\n

D.C. Samuels<\/span>, <\/strong>R.J. Donnelly (1991), Physical Review Letters<\/a><\/em><\/strong> 67 (18): 2505-2508. PMID:10044443.<\/p>\n

 <\/p>\n

The effect of a Coriolis force on Taylor-Couette flow<\/strong><\/p>\n

R.J. Weiner, P.W. Hammer,<\/strong> C.E. Swanson, D.C. Samuels<\/span>, R.J. Donnelly (1991), Journal of Statistical Physics<\/a><\/em><\/strong> 64 (5-6): 913-926.<\/p>\n

 <\/p>\n

 <\/p>\n

1990<\/strong><\/p>\n

Dynamics of the interactions of rotons with quantized vortices in Helium-II<\/strong><\/p>\n

D.C. Samuels<\/span>, R.J. Donnelly (1990), Physical Review Letters<\/a><\/em><\/strong> 65 (2): 187-190. PMID:10042575<\/p>\n

 <\/p>\n

 <\/p>\n

Sideband instability and recurrence of Kelvin waves on vortex cores<\/strong><\/p>\n

D.C. Samuels<\/span>, R.J. Donnelly (1990), Physical Review Letters<\/a><\/em><\/strong> 64 (12): 1385-1388. PMID:10041382.<\/p>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

David Samuels’ peer-reviewed publications in chronological order Links to full text are in the paper names 2019 Mitochondrial DNA Haplogroups and Delirium During Sepsis Samuels, David C.; Hulgan, Todd ; Fessel, Joshua P. ; Billings, Frederic T. ; Thompson, Jennifer L. ; Chandrasekhar, Rameela ; Girard, Timothy D. Critical Care Medicine, 47 (8) 1065-1071.  …<\/p>\n","protected":false},"author":3442,"featured_media":0,"parent":6,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"tags":[],"class_list":["post-20","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/pages\/20","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/users\/3442"}],"replies":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/comments?post=20"}],"version-history":[{"count":14,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/pages\/20\/revisions"}],"predecessor-version":[{"id":99,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/pages\/20\/revisions\/99"}],"up":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/pages\/6"}],"wp:attachment":[{"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/media?parent=20"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/davidsamuels\/wp-json\/wp\/v2\/tags?post=20"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}