{"id":1080,"date":"2015-06-01T16:53:51","date_gmt":"2015-06-01T21:53:51","guid":{"rendered":"http:\/\/my.vanderbilt.edu\/irishlab\/?p=1080"},"modified":"2017-08-21T17:09:43","modified_gmt":"2017-08-21T22:09:43","slug":"published-diggins-et-al-methods-2015","status":"publish","type":"post","link":"https:\/\/my.vanderbilt.edu\/irishlab\/2015\/06\/published-diggins-et-al-methods-2015\/","title":{"rendered":"Published: Diggins et al., Methods 2015"},"content":{"rendered":"<p style=\"text-align: justify\">Congratulations to <a href=\"http:\/\/my.vanderbilt.edu\/irishlab\/members\/current-members\/kirsten-e-diggins-ph-d\/\">Kirsten Diggins<\/a> and <a href=\"http:\/\/my.vanderbilt.edu\/irishlab\/members\/irish-lab-alumni\/p-brent-ferrell-m-d\/\">Brent Ferrell<\/a> on this publication!<\/p>\n<p style=\"text-align: justify\">Diggins KE, Ferrell PB, Irish JM. <a href=\"https:\/\/scholar.google.com\/citations?view_op=view_citation&amp;hl=en&amp;user=-IJndUMAAAAJ&amp;cstart=20&amp;pagesize=80&amp;sortby=pubdate&amp;citation_for_view=-IJndUMAAAAJ:QAOzB4mb83kC\">Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data<\/a>. <strong>Methods <\/strong>2015.<strong>\u00a0<\/strong><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC4468028\/\">PMC4468028<\/a>. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25979346\">Pubmed<\/a>. <a href=\"https:\/\/doi.org\/10.1016\/j.ymeth.2015.05.008\">DOI<\/a>.<\/p>\n<p style=\"text-align: justify\">\u25ba This peer-reviewed methods development research described an automated, modular workflow for unsupervised mass cytometry data analysis based on t-SNE\/viSNE, clustering, and heatmaps.\u00a0 This work revealed the need for machine learning tools that can identify cells, addressed later by MEM in Diggins et al., <em>Nature Methods<\/em> 2017.<\/p>\n<div id=\"attachment_330\" style=\"width: 1485px\" class=\"wp-caption alignleft\"><img loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-330\" class=\"size-full wp-image-330\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/424\/2014\/10\/2015-05-Diggins-et-al-graphical-abstract1.jpg\" alt=\"Diggins et al., Methods 2015 graphical abstract\" width=\"1475\" height=\"595\" srcset=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/424\/2014\/10\/2015-05-Diggins-et-al-graphical-abstract1.jpg 1475w, https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/424\/2014\/10\/2015-05-Diggins-et-al-graphical-abstract1-300x121.jpg 300w, https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/424\/2014\/10\/2015-05-Diggins-et-al-graphical-abstract1-650x262.jpg 650w\" sizes=\"auto, (max-width: 1475px) 100vw, 1475px\" \/><p id=\"caption-attachment-330\" class=\"wp-caption-text\">Diggins et al., Methods 2015 graphical abstract<\/p><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Congratulations to Kirsten Diggins and Brent Ferrell on this publication! Diggins KE, Ferrell PB, Irish JM. Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data. Methods 2015.\u00a0PMC4468028. Pubmed. DOI. \u25ba This peer-reviewed methods development research &hellip; <a href=\"https:\/\/my.vanderbilt.edu\/irishlab\/2015\/06\/published-diggins-et-al-methods-2015\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":565,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":"","_links_to":"","_links_to_target":""},"categories":[7,17,6],"tags":[60,61,56,11,59],"class_list":["post-1080","post","type-post","status-publish","format-standard","hentry","category-irish-lab","category-irish-lab-members","category-publications","tag-bioinformatics","tag-cytomics","tag-kirsten-diggins","tag-machine-learning","tag-methods"],"_links":{"self":[{"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/posts\/1080","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/users\/565"}],"replies":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/comments?post=1080"}],"version-history":[{"count":1,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/posts\/1080\/revisions"}],"predecessor-version":[{"id":1081,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/posts\/1080\/revisions\/1081"}],"wp:attachment":[{"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/media?parent=1080"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/categories?post=1080"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/irishlab\/wp-json\/wp\/v2\/tags?post=1080"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}