{"id":112,"date":"2018-04-18T19:54:02","date_gmt":"2018-04-18T19:54:02","guid":{"rendered":"https:\/\/my.vanderbilt.edu\/tractem\/?p=112"},"modified":"2019-04-23T03:11:17","modified_gmt":"2019-04-23T03:11:17","slug":"acr","status":"publish","type":"post","link":"https:\/\/my.vanderbilt.edu\/tractem\/2018\/04\/18\/acr\/","title":{"rendered":"Anterior Corona Radiata &#8211; acr"},"content":{"rendered":"<p class=\"p1\"><span class=\"s1\"><b>Protocol PDF Document (version 1.2): <a href=\"https:\/\/www.dropbox.com\/preview\/tractography\/Documentation\/TractWeb\/acr.pdf?role=work\">acr<\/a><\/b><\/span><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone  wp-image-832\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-07-12-at-9.51.10-AM.png\" alt=\"Screen Shot 2018-07-12 at 9.51.10 AM\" width=\"337\" height=\"260\" \/> <img loading=\"lazy\" decoding=\"async\" class=\"alignnone  wp-image-833\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-07-12-at-9.52.48-AM.png\" alt=\"Screen Shot 2018-07-12 at 9.52.48 AM\" width=\"234\" height=\"257\" \/><\/p>\n<p><strong>Instructions:<\/strong><\/p>\n<ol>\n<li>Create two separate coronal ROI regions (at approx. coronal\u00a0slice 48): one for the left side, one for the right side<\/li>\n<\/ol>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-684\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-06-07-at-10.48.16-AM.png\" alt=\"Screen Shot 2018-06-07 at 10.48.16 AM\" width=\"238\" height=\"290\" \/>\u00a0<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-686\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-06-07-at-10.45.00-AM.png\" alt=\"Screen Shot 2018-06-07 at 10.45.00 AM\" width=\"266\" height=\"289\" \/><\/p>\n<ol start=\"2\">\n<li>Create two coronal seed regions (at approx. sagittal slice 57), one for each side<\/li>\n<\/ol>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-685\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-06-07-at-10.47.38-AM.png\" alt=\"Screen Shot 2018-06-07 at 10.47.38 AM\" width=\"271\" height=\"300\" \/>\u00a0<img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-687\" src=\"https:\/\/cdn.vanderbilt.edu\/t2-my\/my-prd\/wp-content\/uploads\/sites\/2810\/2018\/04\/Screen-Shot-2018-06-07-at-10.44.13-AM.png\" alt=\"Screen Shot 2018-06-07 at 10.44.13 AM\" width=\"291\" height=\"300\" \/><\/p>\n<ol start=\"3\">\n<li>Create one ROA region and draw a sagittal ROA slice at the midline (at approx. sagittal slice 78)<\/li>\n<\/ol>\n<ol start=\"4\">\n<li>Check the left seed\/ROI regions and ROA region, then perform fiber tracking. Based on this output, the other ROA placements will be clearer.<\/li>\n<\/ol>\n<ol start=\"5\">\n<li>Draw two more ROA regions within the same ROA file:\n<ol>\n<ol>\n<li>on an axial slice inferior to the seed regions<\/li>\n<li>on an axial slice superior to the seed region<\/li>\n<\/ol>\n<\/ol>\n<\/li>\n<\/ol>\n<ol start=\"6\">\n<li>In the region list, check ONLY the left seed\/ROI regions and ROA regions, then perform fiber tracking. Under the tract list, make sure only the left tract is checked and highlighted in purple. Save left regions, tracts, and density files. Once it is saved, delete the left tract in the tract list.<\/li>\n<\/ol>\n<ol start=\"7\">\n<li>In the region list, uncheck the left seed\/ROI regions, check the right seed\/ROI regions and ROA region, then perform fiber tracking. Under the tract list, make sure only the right tract is checked and highlighted in purple. Save right regions, tracts, and density files.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Protocol PDF Document (version 1.2): acr Instructions: Create two separate coronal ROI regions (at approx. coronal\u00a0slice 48): one for the left side, one for the right side \u00a0 Create two coronal seed regions (at approx. sagittal slice 57), one for &hellip; <a href=\"https:\/\/my.vanderbilt.edu\/tractem\/2018\/04\/18\/acr\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":7495,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"categories":[5],"tags":[],"class_list":["post-112","post","type-post","status-publish","format-standard","hentry","category-protocol"],"_links":{"self":[{"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/112","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/users\/7495"}],"replies":[{"embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/comments?post=112"}],"version-history":[{"count":25,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/112\/revisions"}],"predecessor-version":[{"id":876,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/112\/revisions\/876"}],"wp:attachment":[{"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/media?parent=112"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/categories?post=112"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/my.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/tags?post=112"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}