Author Archives: Jonathan Irish

The RAPID manuscript is out in eLife! Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells https://t.co/3knVxOKKIw Massive @IhrieLab @scbiolab collabortaion on #glioblastoma single cell #cytof & #machinelearning. Code & data: https://t.co/4YChZIcKu4 pic.twitter.com/nc9xrQQvxg — Jonathan Irish (@jonathanirish) June 23, 2020

Check out the outstanding articles about our machine learning data analysis tools that will be applied to study COVID-19 immune responses as part of a clinical trial with collaborators at King’s College London: @VanderbiltU story with more about our role in … Continue reading →

We are excited about the launch of the new Human Immunology Discovery Initiative (HIDI) with the Vanderbilt Center for Immunobiology (VCI).  The Irish lab and Cancer & Immunology Core (CIC) are directing the analysis of human blood immunophenotypes and cell signaling using … Continue reading →

Yes!  We are open for rotations for graduate students arriving in 2019. Welcome incoming Vandy grad students! We're recruiting for projects on cancer, immunology, computational biology, & more. See you at the CDB lunch & posters on Fri, Aug 16! … Continue reading →

It’s the last few days to submit an abstract (due July 15) for the “New Directions in Immuno-Onocology” conference Shahram Kordasti and I are part of organizing in London this September.  Still time to register.  Hope to see you there! … Continue reading →

Jonathan and Irish lab members Caroline Roe and Todd Bartkowiak had a great time at CYTO 2019 in Vancouver with collaborators Jeff Rathmell, Justine Sinnaeve, and Aïda Meghraoui-Kheddar.  Some highlights: Caroline Roe from the Irish lab presenting her #CYTO2019 poster … Continue reading →

The latest version v3.0 of Marker Enrichment Modeling (MEM) is now available on Github at the Irish lab’s Github repostory: https://github.com/cytolab/mem The license is the same as before, which provides free use for academic groups and requires licensing MEM for any commercial … Continue reading →

Congrats to Mikael Roussel and Todd Bartkowiak on their publication of a review and protocol for polarization of human monocytes and assessment by mass cytometry. Roussel M, Bartkowiak T, Irish JM. Picturing Polarized Myeloid Phagocytes and Regulatory Cells by Mass Cytometry. … Continue reading →

Look out world, Dr. Irish is back on Twitter (after 10 years… !): https://twitter.com/jonathanirish Coming out of retirement in part to engage in bioRxiv: New work from the Irish & Ihrie labs @ Vanderbilt just up on bioRxiv: https://t.co/5XucEOtUnT — Jonathan … Continue reading →

Congrats to Akshitkumar Mistry, Allison Greenplate, and Rebecca Ihrie on publication of our review of mass cytometry in the context of single cell biology techniques! Mistry AM, Greenplate AR, Ihrie RA, Irish JM. Beyond the Message: Advantages of Snapshot Proteomics … Continue reading →