Author Archives: Jonathan Irish

Marker Enrichment Modeling (MEM) v3 on Github

The latest version v3.0 of Marker Enrichment Modeling (MEM) is now available on Github: https://github.com/JonathanIrish/MEMv3/ The license is the same as before, which provides free use for academic groups and requires licensing MEM for any commercial use.  For more information about licensing, … Continue reading

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Published: Greenplate et al., Cancer Immunology Research 2019

Congrats to Allie Greenplate, Danny McClanahan, Deon Doxie, Caroline Roe, Kirsten Diggins, Nalin Leelatian, and collaborators on their publication! Greenplate AR, McClanahan DD, Oberholtzer BK, Doxie DB, Roe CE, Diggins KE, Leelatian N, Rasmussen ML, Kelley MC, Gama V, Ferrell PB, Johnson DB, Irish … Continue reading

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2018 Open for Rotations

Yes!  We are open for rotations for graduate students arriving summer 2018.  Dr. Jonathan Irish’s office is in PRB 740B.  If you are interested in a potential rotation, please read the information below and contact Jonathan by e-mail to set up … Continue reading

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Dr. Irish appointed at King’s College London

Dr. Jonathan Irish is joining King’s College London as Visiting Associate Professor and Honorary Senior Lecturer. This role grew out of the Irish lab’s longstanding collaboration with Dr. Shahram Kordasti, MSc, MD, PhD. focused on human immunology, immune based therapies, and blood diseases (e.g. Kordasti … Continue reading

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Award: VICB Highly Cited Articles for Diggins publication

The Diggins et al., Methods 2015 manuscript describing a generalized, modular workflow for fluorescence and mass cytometry data analysis was awarded this month alongside publications from the Cortez and Lacy labs with a Vanderbilt Institute for Chemical Biology (VICB) prize for a … Continue reading

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Ph.D. defense: Congrats Dr. Doxie!

Deon B. Doxie defended his Ph.D. thesis entitled Quantitative Single Cell Analysis of Cancerous Cells During Therapy at Vanderbilt University, USA.  Deon joined in May 2012 and defended in June 2018 after ~6 years in the Irish lab.  Deon’s publications include first … Continue reading

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Published: Doxie et al., Pigment Cell and Melanoma Research 2018

Congrats to Deon Doxie, Allie Greenplate, Jocelyn Gandelman, Kirsten Diggins, Caroline Roe, and collaborators on their publication! Doxie DB, Greenplate AR, Gandelman JS, Diggins KE, Roe CE, Dahlman KB, Sosman JA, Kelley MC, Irish JM.  BRAF and MEK inhibitor therapy … Continue reading

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Elected: Jonathan Irish joins ISAC Council

Jonathan Irish was elected as a 2018-2022 Council member of the International Society for the Advancement of Cytometry (ISAC). Together with the ISAC President, the ISAC Council forms the leadership of ISAC. Every two years, 4 members are selected in … Continue reading

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Published: 2018 Diggins et al., Current Protocols in Cytometry

Congrats to Kirsten Diggins, Jocelyn Gandelman, and Caroline Roe on their publication!  This protocol aggregates code, scripts, and examples for MEM that we use regularly in courses and research: Diggins KE, Gandelman JS, Roe CE, Irish JM. Generating Quantitative Cell … Continue reading

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Published: Earl & Ferrell et al., Nature Communications 2018

Congratulations to David Earl & Brent Ferrell, co-first authors, and co-author Nalin Leelatian for their work that just came out in Nature Communications! Earl DC*, Ferrell PB*, Leelatian N, Froese J, Reisman B, Irish JM**, Bachmann BO**. Discovery of human cell selective … Continue reading

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