Protocol PDF Document (version 1.2): pct
Instructions:
- Create two separate sagittal seed regions (at approx. sagittal slice 76 and 80), one for each side
- Create two separate sagittal ROI regions (lateral to the seed regions) (at approx. coronal slice 73 and 83), one for each side.
- In the region list, check only the left seed region, then run fiber tracking. Based on this output, ROA placement will be clearer.
- Create one ROA region and draw three different regions:
- on a coronal slice anterior to the seed region
- on an axial slice superior to the seed region
- on an axial slice inferior to the seed region
- Check all seed regions and ROA region. Perform fiber tracking.
- Under the tract list, make sure only the desired tract is checked and highlighted in purple. Save region, tract, and density files.
Confusing – does this cross midline? Is there L/R? I would suggest just two ROIs rather than two seeds, two ROIs, 3 exclusion regions.
Need anatomical descriptions – where is seed placed? Where are ROAs placed? I assume we want to reference exclusion regions in reference to cerebellum anatomy.
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