Author Archives: Bennett Landman

Cortical Associated White Matter Frontal Lobe (fl)

Protocol PDF Document (version 1.2): fl Instructions: Load the unique frontal lobe mask generated by a multi-atlas segmentation algorithm applied to the subject’s native space T1 image Set the tracking parameters max length(mm) to 150.0 Copy the left and right mask … Continue reading

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Cortical Associated White Matter Occipital Lobe (ol)

Protocol PDF Document (version 1.2): ol Instructions: Load the unique frontal lobe mask generated by a multi-atlas segmentation algorithm applied to the subject’s native space T1 image Set the tracking parameters max length(mm) to 150.0 Copy the left and right mask … Continue reading

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Uncinate Fasciculus (unc)

Protocol PDF Document (version 1.2): unc Instructions: Create two separate axial seed regions (at approx. axial slice 56), one for each side. Create one ROA region and draw two sagittal ROA slice near the midline – medial to the left seed (at … Continue reading

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Cortical Associated White Matter Temporal Lobe (tl)

Protocol PDF Document (version 1.2): tl Instructions: Load the unique frontal lobe mask generated by a multi-atlas segmentation algorithm applied to the subject’s native space T1 image Set the tracking parameters max length(mm) to 150.0 Copy the left and right mask … Continue reading

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Tapetum of the Corpus Callosum (tap)

Protocol PDF Document (version 1.2): tap   Instructions: Create two separate axial regions (at approx. axial slice 82), one for each side – select one as a seed and the other as a ROI. Then run fiber tracking. Based on this output, … Continue reading

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Sagittal Stratum (ss)

Protocol PDF Document (version 1.2): ss Instructions: Create two separate axial seed regions (at approx. axial slice 64), one for each side. Create one ROA region and draw a sagittal ROA slice at the midline In the region list, check only the left … Continue reading

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Superior Longitudinal Fasciculus (slf)

Protocol PDF Document (version 1.2): slf Instructions: Create two separate coronal seed regions (at approx. coronal slice 96), one on each side. Create one ROA region and draw a sagittal ROA slice at the midline In the region list, check only the … Continue reading

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Superior Fronto Occipital Fasciculus (sfo)

Protocol PDF Document (version 1.2): sfo Instructions: Create two separate coronal seed regions (at approx. coronal slice 75), one for each side.   Create two separate coronal ROI regions (at approx. coronal slice 69), one for each side.   Create one ROA region … Continue reading

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Superior Corona Radiata (scr)

Protocol PDF Document (version 1.2): scr Instructions: Create two separate axial seed regions (at approx. axial slice 99), one for each side. Create one ROA region and draw a sagittal ROA slice at the midline In the region list, check only the left … Continue reading

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Superior Cerebellar Peduncle (scp)

Protocol PDF Document (version 1.2): scp Instructions: Create two separate coronal seed regions (at approx. coronal slice 114), one for each side. Create two separate coronal ROI regions (at approx. coronal slice 104), one for each side. Then run fiber tracking. Based on … Continue reading

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