Midbrain – m

Protocol PDF Document (version 1.2): mm1


  1. Create one coronal seed region (at approx. coronal slice 96), then run fiber tracking. Based on this output, ROA placement will be clearer.


  1. Create one axial ROA region superior to the seed region
  1. In the region list, check the seed region and ROA regions. Perform fiber tracking.
  1. Under the tract list, make sure only the desired tract is checked and highlighted in purple. Save region, tract, and density files.
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2 Responses to Midbrain – m

  1. Kurt says:

    where should this region be? Any description other than “slice number 96”? What should it cover?

  2. Kurt says:

    “ROA placement will be clear” what does this mean? And where should ROAs be? Probably needs anatomical description.

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