Category Archives: Protocol

Splenium of the Corpus Callosum (scc)

Protocol PDF Document (version 1.2): scc Instructions: Create one sagittal seed region (at approx. sagittal slice 78) at the midline whereas the anterior extent of the splenium of the corpus callosum lines up with the posterior of the body of the corpus callosum … Continue reading

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Posterior Thalamic Radiation (ptr)

Protocol PDF Document (version 1.2): ptr Create four separate coronal ROI regions (at approx. coronal slice 111 and 118), two for each side, anterior to the seed region. (only 2 of the 4 coronal ROI regions are essential) Create two separate coronal … Continue reading

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Cortical Associated White Matter Parietal Lobe (pl)

Protocol PDF Document (version 1.2): pl Instructions: Load the unique frontal lobe mask generated by a multi-atlas segmentation algorithm applied to the subject’s native space T1 image Set the tracking parameters max length(mm) to 150.0 Copy the left and right mask … Continue reading

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Posterior Limb of the Internal Capsule (pic)

Protocol PDF Document (version 1.2): pic   Instructions: Create two separate axial seed regions (at approx. axial slice 87), one for each side.   Create one ROA region and draw a sagittal ROA slice at the midline In the region list, check … Continue reading

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Pontine Crossing Tract (pct)

Protocol PDF Document (version 1.2): pct Instructions: Create two separate sagittal seed regions (at approx. sagittal slice 76 and 80), one for each side Create two separate sagittal ROI regions (lateral to the seed regions) (at approx. coronal slice 73 and 83), one … Continue reading

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Posterior Corona Radiata (pcr)

Protocol PDF Document (version 1.2): pcr  Instructions: Create two separate axialseed regions (at approx. axial slice 97), on for each side.   Create one ROA region and draw a sagittal ROA slice at the midline In the region list, check only the … Continue reading

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Cingulum (cingulate gyrus part) – cgc

Protocol PDF Document (version 1.2): cgc Instructions: 1) Create four separate coronal seed regions (at approx. coronal slice 63 and 105), two for each side. Create one ROA region on a sagittal slice at the midline (at approx. sagittal slice 78). In … Continue reading

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Inferior Cerebellar Peduncle – icp

Protocol PDF Document (version 1.2): icp Instructions: Create two separate axial seed regions (at approx. axial slice 33), one on each side Create two separate axial ROI regions (at approx. axial slice 44), one on each side. Create one ROA region on … Continue reading

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Inferior Fronto-Occipital Fasciculus – ifo

Protocol PDF Document (version 1.2): ifo Instructions: Create two separate coronal ROI regions (at approx. coronal slice 110), one on each side Create two separate coronal seed regions (at approx. coronal slice 91), one on each side Create two additional separate coronal … Continue reading

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Inferior Longitudinal Fasciculus – ilf

Protocol PDF Document (version 1.2): ilf Instructions: Create two separate coronal ROI regions (at approx. coronal slice 98), one on each side Create two separate coronal seed regions (at approx. coronal slice 110), one on each side Create two additional separate coronal … Continue reading

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