Neuroimaging Category
Hierarchical Particle Optimization for Cortical Shape Correspondence in Temporal Lobe Resection
Aug. 31, 2023—Yue Liu, Shunxing Bao, Dario J. Englot, Victoria L. Morgan, Warren D. Taylor, Ying Wei, Ipek Oguz, Bennett A. Landman, Ilwoo Lyu Paper: https://pubmed.ncbi.nlm.nih.gov/36525831/ Abstract Background: Anterior temporal lobe resection is an effective treatment for temporal lobe epilepsy. The post-surgical structural changes could influence the follow-up treatment. Capturing post-surgical changes necessitates a well-established cortical shape correspondence...
Short superficial white matter and aging: a longitudinal multi-site study of 1293 subjects and 2711 sessions
Aug. 31, 2023—Kurt G Schilling, Derek Archer, Francois Rheault, Ilwoo Lyu, Yuankai Huo, Leon Y Cai, Silvia A Bunge, Kevin S Weiner, John C Gore, Adam W Anderson, Bennett A Landman Paper: https://pubmed.ncbi.nlm.nih.gov/36817413/ Abstract It is estimated that short association fibers running immediately beneath the cortex may make up as much as 60% of the total white matter...
Superficial white matter across development, young adulthood, and aging: volume, thickness, and relationship with cortical features
Aug. 31, 2023—Kurt G Schilling, Derek Archer, Francois Rheault, Ilwoo Lyu, Yuankai Huo, Leon Y Cai, Silvia A Bunge, Kevin S Weiner, John C Gore, Adam W Anderson, Bennett A Landman Paper: https://pubmed.ncbi.nlm.nih.gov/37074446 Abstract Superficial white matter (SWM) represents a significantly understudied part of the human brain, despite comprising a large portion of brain volume and making up...
Distortion correction of functional MRI without reverse phase encoding scans or field maps
Aug. 31, 2023—Tian Yu, Leon Y. Cai, Salvatore Torrisi, An Thanh Vu, Victoria L. Morgan, Sarah E. Goodale, Karthik Ramadass, Steven L. Meisler, Jinglei Lv, Aaron E.L. Warren, Dario J. Englot, Laurie Cutting, Catie Chang, John C. Gore, Bennett A. Landman, Kurt G. Schilling Paper: https://www.sciencedirect.com/science/article/pii/S0730725X23001121 Code: https://github.com/MASILab/SynBOLD-DisCo Abstract Functional magnetic resonance images (fMRI) acquired using echo planar sequences...
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation
Aug. 31, 2023—Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai , Riqiang Gao, Ho Hin Lee, Thomas Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang Paper: https://arxiv.org/abs/2209.14378 Code: https://github.com/Project-MONAI/model-zoo/tree/dev/models Abstract Transformer-based models, capable of learning better global dependencies, have recently demonstrated exceptional repre- sentation learning capabilities...
Functional alterations in bipartite network of white and grey matters during aging
Aug. 31, 2023—Yurui Gao, Yu Zhao, Muwei Li, Richard D Lawless, Kurt G Schilling, Lyuan Xu, Andrea T Shafer, Lori L Beason-Held, Susan M Resnick, Baxter P Rogers, Zhaohua Ding, Adam W Anderson, Bennett A Landman, John C Gore. Paper: https://pubmed.ncbi.nlm.nih.gov/37473978/ Abstract The effects of normal aging on functional connectivity (FC) within various brain networks of gray matter...
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
May. 29, 2023—Leon Y. Cai, Ho Hin Lee, Nancy R. Newlin, Cailey I. Kerley, Praitayini Kanakaraj, Qi Yang, Graham W. Johnson, Daniel Moyer, Kurt G. Schilling, François Rheault, and Bennett A. Landman Paper: https://www.biorxiv.org/content/10.1101/2023.02.25.530046v2 Code: https://github.com/MASILab/cornn_tractography Abstract Diffusion MRI (dMRI) streamline tractography is the gold-standard for in vivo estimation of white matter (WM) pathways in the brain. However, the...
Implementation considerations for deep learning with diffusion MRI streamline tractography
May. 29, 2023—Leon Y. Cai, Ho Hin Lee, Nancy R. Newlin, Michael E. Kim, Daniel Moyer, Francois Rheault, Kurt G. Schilling, and Bennett A. Landman Paper: https://www.biorxiv.org/content/10.1101/2023.04.03.535465v1 Code: https://github.com/MASILab/STrUDeL Abstract One area of medical imaging that has recently experienced innovative deep learning advances is diffusion MRI (dMRI) streamline tractography with recurrent neural networks (RNNs). Unlike traditional imaging studies which...
Aging and white matter microstructure and macrostructure: a longitudinal multi-site diffusion MRI study of 1218 participants
Dec. 13, 2022—Kurt G Schilling, Derek Archer, Fang-Cheng Yeh, Francois Rheault, Leon Cai, Colin Hansen, Qi Yang, Karthik Ramdass, Andrea Shafer, Susan Resnick, Kimberly R. Pechman, Katherine A. Gifford, Timothy J. Hohman, Angela Jefferson, Adam W Anderson, Hakmook Kang, Bennett A Landman. “Aging and white matter microstructure and macrostructure: a longitudinal multi-site diffusion MRI study of 1218 participants.” Brain...
Prevalence of white matter pathways coming into a single diffusion MRI voxel orientation: the bottleneck issue in tractography
Dec. 13, 2022—Kurt G. Schilling, Chantal M.W. Tax, Francois Rheault, Bennett Landman, Adam Anderson, Maxime Descoteaux*, Laurent Petit*. “Prevalence of white matter pathways coming into a single diffusion MRI voxel orientation: the bottleneck issue in tractography”. Human Brain Mapping 43(4), 1196-1213. (2022) Full Text Abstract Characterizing and understanding the limitations of diffusion MRI fiber tractography is a...