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Histology Category

Enabling Multi-shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE

Jan. 17, 2020—Nath V, Lyu I, Schilling KG, Parvathaneni P, Hansen CB, Huo Y, Janve VA, Gao Y, Stepniewska I, Anderson AW, Landman BA. Enabling Multi-shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. In International Conference on Medical Image Computing and Computer-Assisted Intervention 2019 Oct 13 (pp. 573-581). Springer, Cham. Full text: https://arxiv.org/ftp/arxiv/papers/1907/1907.06319.pdf Abstract Intra-voxel...

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Deep learning reveals untapped information for local white-matter fiber reconstruction in diffusion-weighted MRI

Jan. 17, 2020—Nath V, Schilling KG, Parvathaneni P, Hansen CB, Hainline AE, Huo Y, Blaber JA, Lyu I, Janve V, Gao Y, Stepniewska I, Anderson AW, Landman BA. Deep learning reveals untapped information for local white-matter fiber reconstruction in diffusion-weighted MRI. Magnetic resonance imaging. 2019 Oct 1;62:220-7. Abstract PURPOSE: Diffusion-weighted magnetic resonance imaging (DW-MRI) is of critical importance...

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Diffusion MRI microstructural models in the cervical spinal cord – application, normative values, and correlations with histological analysis

Dec. 16, 2019—Kurt G. Schilling, Samantha By, Haley Feiler, Bailey Box, Kristin P. O’Grady, Atlee Witt, Bennett A. Landman, Seth A. Smith. “Diffusion MRI microstructural models in the cervical spinal cord – application, normative values, and correlations with histological analysis”. NeuroImage. doi: 10.1016/j.neuroimage.2019.116026. 2019. Full text: https://www.ncbi.nlm.nih.gov/pubmed/31326569 Abstract Multi-compartment tissue modeling using diffusion magnetic resonance imaging has proven...

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Learning 3D White Matter Microstructure from 2D Histology

Apr. 1, 2019—Histological analysis is typically the gold standard for validating measures of tissue microstructure derived from magnetic resonance imaging (MRI) contrasts. However, most histological investigations are inherently 2-dimensional (2D), due to increased field-of-view, higher in-plane resolutions, ease of acquisition, decreased costs, and a large number of available contrasts compared to 3-dimensional (3D) analysis. Because of this,...

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Histologically derived fiber response functions for diffusion MRI vary across white matter fibers-An ex vivo validation study in the squirrel monkey brain.

Mar. 16, 2019—Kurt G. Schilling, Yurui Gao, Iwona Stepniewska, Vaibhav Janve, Bennett A. Landman, Adam W. Anderson. “Histologically derived fiber response functions for diffusion MRI vary across white matter fibers – an ex vivo validation study in the squirrel monkey brain”. NMR in Biomedicine. 2019 Jun;32(6):e4090. doi: 10.1002/nbm.4090. Epub 2019 Mar 25. Full text: https://www.ncbi.nlm.nih.gov/pubmed/30908803 Abstract Understanding the...

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